Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00959 ATGCTTGCGGTGTCACCTTTGAGGACCAACAGAGATGATGAAATCCAAGGACAGGACCTGGAGACCTTATCCATCATTGGAGAAGACGACTTTGCTGAATTATCCGAGGGCAATTTGTTGGAAAGCATCAACTTCGACGATCTCTTCGCCGGCATCAGCCACGCAGATGTCTTGCCGGATCTCGAAATGGATCCTGACATCTTCGCCGACTTCTCACTCAGCGGAGCTCACAATTCTTCATCCCTAGTCTTGAATGGTTGTGGCAAATCGGCTTCTTCGGAATCCGGGTCGAGTAGTCGAGGGGAGGAGATAGTGAGCAAAAGAGATGGATCCGTCGTAGTGAATCCATCCCCTGGTAATAAAGAAGGTGATAATAAAGGAAGAAAATCATCTTCCTCCTCATCATGTCAATCAAAGAATCCTCATCAAACCAAGAAAAAGGTTAAGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTTGTTCAAGCAGTGGAGCAGCTGGGAGTTGATAAAGCAGTCCCTTCAAGGATTCTAGAGATCATGGGAATTGACTGCCTCACCCGCCATAACATCGCTAGCCACCTTCAGAAATATCGATCACATAGGAAGCATATACTAGCTCGGGAGGCTGAAGCAGCAAGTTGGAGTCAACGGAGGCAGATGTATGGTGGAGGGAGAGGGAAGAGAGAGGTGAGCCCTTGGGTTGCACCAACCATTGGTTTTCCTCCCACTCCAATTACATCAATGCCGCCCCAGTTTAGACCCTTACATGTGTGGGGTCATCCCACCATGCACATGTGGCCGCCTAAACCTCATCAGCCACCGCCTCCTGCACCTTGGCCTTCAGACCCTTCTTATTGGCACCACCCTCACCACCAAAGGGCTCATCAAAAGGCAGTACCACCAGCAACACCGTGTTTTCCACAACCTCTGACAACAACGAGATTTGGTTCTCCGCCAACCACCACCGTGGCGGGTATCCCACCACCACAGCGTGCCATCTATAAAGTAGATCCCGGCATGCCCAAGCCCCTAGTTGACTTCCATCCGTCAAAGGAAAGCGTAGATGCTGCGATTGGTGATGTATTATCAAAACCATGGCTGCCACTGCCACTTGGGCTTAAAGCTCCAGCGGTAGAGTGTGTGGTGGGTGAGTTACAGAGACAAGGAATTCCAAAAATTCCACCCTCAACTCCTGTGCTTAATTAA 1212 0.4992 MLAVSPLRTNRDDEIQGQDLETLSIIGEDDFAELSEGNLLESINFDDLFAGISHADVLPDLEMDPDIFADFSLSGAHNSSSLVLNGCGKSASSESGSSSRGEEIVSKRDGSVVVNPSPGNKEGDNKGRKSSSSSSCQSKNPHQTKKKVKKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHILAREAEAASWSQRRQMYGGGRGKREVSPWVAPTIGFPPTPITSMPPQFRPLHVWGHPTMHMWPPKPHQPPPPAPWPSDPSYWHHPHHQRAHQKAVPPATPCFPQPLTTTRFGSPPTTTVAGIPPPQRAIYKVDPGMPKPLVDFHPSKESVDAAIGDVLSKPWLPLPLGLKAPAVECVVGELQRQGIPKIPPSTPVLN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00959 403 Gene3D - 144 206 - -
Aip08g00959 403 SUPERFAMILY Homeodomain-like 149 205 IPR009057 -
Aip08g00959 403 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 399 IPR044825 GO:0003700|GO:0045893
Aip08g00959 403 MobiDBLite consensus disorder prediction 86 151 - -
Aip08g00959 403 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 399 - -
Aip08g00959 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 202 IPR006447 GO:0003677
Aip08g00959 403 Pfam Myb-like DNA-binding domain 151 200 IPR001005 -
Aip08g00959 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 145 204 IPR017930 -
Aip08g00959 403 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00959 Aip-Chr8 11160447 11165538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00959 1 289 G2-like Transcription Factor Family AT5G44190 44.268 1.45e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip08g00959 Myb_DNA-binding 5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00959 - - qsu:112013245 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00959 08 11160447 11165538 Aip08g00959 08 11160447 11165538 ECH