Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00956 ATGGCTTCGTTATTTAAGGATCCAGCGAAGCTTTCAGCTTATCGAGATAGAAGATTTCCCGGAAATCAGGAGGAGTTTGAGCATGCTCTGCAGACATCAACAACGGTTTATGTTGGAAATATGTCATTTTACACGACAGAGGAGCAAGTTTATGAGCTGTTTTCCCGAGCTGGAGAAATTAAGAAGATCATCATGGGCTTGGATAAGAACTCGAAAACACCCTGCGGCTTCTGTTTTGTTCTATATTACTCACGTGAAGATACAGAGGATGCTTGCAAATATATAAGTGGGACAATACTTGATGATCGCCCCATTCGTGTTGATTTTGATTGGGGGTTCCAAGATGGAAGACAATGGGGCCGTGGTCGTAGCGGTGGCCAGGTTAACTGTGGTTATGGGAAGTTGGTCCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGACTATGGCGCTGGTTCTTTGGGTTCTTTCCCACCTGTTATTCCGCATTCATATGGTAGACATGGTGGAGGCCATGCCCATGCTCATGGTCATGGTGGATCCCATCGGCATGGTAGAGACTACCATAGGAAGAGATACAGAGATGATGACCGCCACCCTCCACATGAATCCTCAAAGAGAACATCAGATCATGAATCTCGGAGAAATGCTGACCCTGATTCTAGACCGGAAAAAAATCCACGATTTCGCGAGAGTGGTGATTCTGACGAGGATGAGGAAGATGATCGAAAGAGACGGGCTTAA 744 0.457 MASLFKDPAKLSAYRDRRFPGNQEEFEHALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVNCGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPHSYGRHGGGHAHAHGHGGSHRHGRDYHRKRYRDDDRHPPHESSKRTSDHESRRNADPDSRPEKNPRFRESGDSDEDEEDDRKRRA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00956 247 MobiDBLite consensus disorder prediction 169 189 - -
Aip08g00956 247 CDD RRM_NCBP2 36 113 IPR034148 -
Aip08g00956 247 Gene3D - 6 246 IPR012677 -
Aip08g00956 247 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 200 IPR027157 GO:0000339|GO:0005846|GO:0045292
Aip08g00956 247 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 200 - -
Aip08g00956 247 SMART rrm1_1 35 108 IPR000504 GO:0003723
Aip08g00956 247 MobiDBLite consensus disorder prediction 162 247 - -
Aip08g00956 247 SUPERFAMILY RNA-binding domain, RBD 22 133 IPR035979 GO:0003676
Aip08g00956 247 MobiDBLite consensus disorder prediction 190 247 - -
Aip08g00956 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Aip08g00956 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00956 Aip-Chr8 11104009 11107748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00956 31 122 Eukaryotic Initiation Factors Gene Family AT1G49760 27.174 5.12e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00956 K12883 - gmx:100776217 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00956 08 11104009 11107748 Aip08g00956 08 11104009 11107748 ECH