Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00946 ATGATGGATTCCATGAAAGGAGGAACAGAAACAAGAACAGAGCCAAAGCAACAGCAGAAACAAGAATGTGCGACTACTTTCCTGAATGAGGGTATCCTTATGCTTCTCTCTGGCTGGCATGCCCTTCAAATGGCCATCAACAACCAATGGGGTGGCTCTAACTCCCTCCAGAAATCCCACCACCTTGCTTCTCATCTTTTCTCTTCCTTATCCAAATTCTATGCACTCGTTTCTATTGAAGATTTGGAAAATCTGCTCCATGAATGCATGTTGCTTACATTTAACACAGAGATAGAAGATGGCAGTATTGAACAGGTAGCAGAACAGTTGGTACCACTATTTCAGCACATGGATGATCTGGTCTTAGAGAACATTTGTGACCGTGTGAGGAAAGCTGGGATGATGAAGAAGAAGCAGCAGCAGCAGAAAGAGCAAGTGAAGTGA 444 0.4369 MMDSMKGGTETRTEPKQQQKQECATTFLNEGILMLLSGWHALQMAINNQWGGSNSLQKSHHLASHLFSSLSKFYALVSIEDLENLLHECMLLTFNTEIEDGSIEQVAEQLVPLFQHMDDLVLENICDRVRKAGMMKKKQQQQKEQVK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00946 147 Pfam Pre-rRNA-processing protein TSR2 29 108 IPR019398 -
Aip08g00946 147 PANTHER PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN 8 124 - -
Aip08g00946 147 PANTHER UNCHARACTERIZED 8 124 IPR019398 -
Aip08g00946 147 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00946 Aip-Chr8 10908865 10909841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00946 111 144 Ion Channels AT5G54250 70.588 2.34e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00946 K14800 - gmx:100812091 127.102