LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip08g00939	ATGCCTGCACAGAAGCGCCCTTACCCTGACACTCTCGACGACGCCGACGACTCCTCCAACCACCTCTTCCCTCATCGCCACCCCAAGCACCACCGCGACCGCACCCTCAAGCCCCACCATCCAGATGAAGATGCTGCTGGAGCCCACAAGGAAGAGGACGAGCAAGAACAAGAGCAAGGGGATGCTGAGCAAGAAGATGAGGAAGATGAGCAACAAGGAGCAGAAGAAGAAGAAGATGATGATGAAGAAGAAGAAGAAGAGGACGATGACGAAGATGAAGATGAAGGTGAGGGAGATGAAGAAGATGAAGAAGAAGGGAAACACAACGACGAGGGTAAACCCGATGGTTACGTATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAGGATGTCCAGTGCCCAATTTGCCTTGGCATTATTAAGAAAACAAGAACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTTGGGAACAATGAATGCCCTGCTTGCCGAACACATTGTGCCAGTCGCCGTTCTTTGAGAGATGATCCGAAATATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAGTCTGAAGCACTAGTTAAGAGACGTAAAGATTCACCAAGTGTATTCGTGACAAGATCCCAGCGAAATCAACGAAATGCTTCTAGGAGACAAAATCAAGTGATTGATATTCAAGGATCTGAGGATAATGAGGAGGAAAATGACAATAACGAAAAGGACTCATCATCTGCTGATGAGCGGGGTACAGAGGCGAGGCAAAGAAGGAGAAAGAGATGGACCAGAGTTCGCACCTCTCAGCCCTCATCATCAATGGCAAGTCCTGATGGTGGATGTGCAGAAAGTGACTTGGATAACGGTAGAGAAAATCGAGGACTTTCAAGGCAGGTGTCAAAACCTCGAAAACTTACATGGGGAAGGGGTGGATTTAGAAGTCACACAAGGCATGGAAGTGGCAGTGGTAGTAGTAGCAAAAGCTCTCGCAGTAGTCGAGTGTCTAAGATGGTTGATTTTCTCCGAAACTTGGATGAGAATGCTGATGAGTTAGATATCCATCTCATGCTTTATTCTTTGGGCAAACGAGGCGCACCAAGTTTGGAGAAGCCACACCTTTGCTGTCGCCCAACTTTGTCTGTCAAGAACCTTTGCGAATATGTTGCTCGCCAAACACCTGTGCCTGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCAGTGGCACAGATTTCGACAAGTCAACTGATGAGACTTCATCCTTGATATGTGATGAGCTAACAACTCTGGTTATAGATCCATCTAAATATGAACTAGAAATTTTGCAGGGAGATGAATCTTTAGCAGGGATTAGATCTAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGCGGAAAGGGGCACTATAG	1539	0.4568	MPAQKRPYPDTLDDADDSSNHLFPHRHPKHHRDRTLKPHHPDEDAAGAHKEEDEQEQEQGDAEQEDEEDEQQGAEEEEDDDEEEEEEDDDEDEDEGEGDEEDEEEGKHNDEGKPDGYVFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPKYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDSPSVFVTRSQRNQRNASRRQNQVIDIQGSEDNEEENDNNEKDSSSADERGTEARQRRRKRWTRVRTSQPSSSMASPDGGCAESDLDNGRENRGLSRQVSKPRKLTWGRGGFRSHTRHGSGSGSSSKSSRSSRVSKMVDFLRNLDENADELDIHLMLYSLGKRGAPSLEKPHLCCRPTLSVKNLCEYVARQTPVPVEEVEILAVKGCSGTDFDKSTDETSSLICDELTTLVIDPSKYELEILQGDESLAGIRSKCISKREHLILAYRRKGAL	512

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip08g00939	512	ProSitePatterns	Zinc finger RING-type signature.	149	158	IPR017907	-
	Aip08g00939	512	SMART	ring_2	133	172	IPR001841	-
	Aip08g00939	512	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED	1	509	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	357	373	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	9	23	-	-
	Aip08g00939	512	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	127	196	IPR013083	-
	Aip08g00939	512	PANTHER	OS11G0578200 PROTEIN	1	509	IPR044592	-
	Aip08g00939	512	Pfam	Zinc finger, C3HC4 type (RING finger)	132	172	-	-
	Aip08g00939	512	SUPERFAMILY	RING/U-box	115	187	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	36	55	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	1	114	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	231	373	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	324	338	-	-
	Aip08g00939	512	CDD	RING-HC_RING1_like	133	173	-	-
	Aip08g00939	512	Coils	Coil	48	84	-	-
	Aip08g00939	512	Coils	Coil	199	230	-	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	56	106	-	-
	Aip08g00939	512	ProSiteProfiles	Zinc finger RING-type profile.	133	173	IPR001841	-
	Aip08g00939	512	MobiDBLite	consensus disorder prediction	246	268	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip08g00939	126	196	C3H Transcription Factor Family	AT3G23060	35.135	4.17e-07	50.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip08g00939	K10695		-	gmx:100776547	552.362

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip08g00939	08	10872370	10877488	Aip08g00939	08	10872370	10877488	ECH