Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00936 ATGGACCGGGGTGGTGGTGAAGACGCGCCGCTAGAGGCGAAGAGGGAGCCTAAGCCGGATGAAGATCATAATAATAATAAGAAGAAGAAGAAGAAGAAAGAAGTGCCGGTGACATGTGTTAGCGGGAAGAAAGGTTCCGGTGGCGGCATGCGGTGTTGTCAAGCTGAGAAGTGCAAGGCGGATCTTGAGGAGGCAAGGCAGTACCATAGGAGGCACAAGGTGTGTGAGTACCATGCCAAGGCTCAGGTGGTTCTTGTTTCTGGCATTAGACAACGCTTCTGTCAGCAATGTAGCAGGTTCCATGAGATAGGTGAATTTGATGACACAAAACGAAGTTGCCGGAGCCGTTTGGCCGGACACAACAAACGGCGAAGAAAGAACTCTGATTCTCAAGCAGAAGGGTCGAGGCGCAAAGGGATATGTCCTCGGTTGAAGAAGGACACTGCCTGTGGAGATGATAGGAGCAGAATTCAGATTGCAATCCAAGAGAGTGGAGCTTATAAACATTTCCAGATAAGATGA 522 0.4962 MDRGGGEDAPLEAKREPKPDEDHNNNKKKKKKKEVPVTCVSGKKGSGGGMRCCQAEKCKADLEEARQYHRRHKVCEYHAKAQVVLVSGIRQRFCQQCSRFHEIGEFDDTKRSCRSRLAGHNKRRRKNSDSQAEGSRRKGICPRLKKDTACGDDRSRIQIAIQESGAYKHFQIR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00936 173 MobiDBLite consensus disorder prediction 1 40 - -
Aip08g00936 173 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Aip08g00936 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 173 IPR044817 GO:0003677
Aip08g00936 173 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 36 173 - -
Aip08g00936 173 MobiDBLite consensus disorder prediction 124 138 - -
Aip08g00936 173 Gene3D - 44 114 IPR036893 GO:0003677|GO:0005634
Aip08g00936 173 Pfam SBP domain 53 126 IPR004333 GO:0003677
Aip08g00936 173 SUPERFAMILY SBT domain 51 130 IPR036893 GO:0003677|GO:0005634
Aip08g00936 173 MobiDBLite consensus disorder prediction 1 28 - -
Aip08g00936 173 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00936 Aip-Chr8 10854096 10855075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00936 40 159 SBP-box Gene Family AT1G53160 56.000 2.02e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip08g00936 SBP 6.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00936 - - ccaj:109810441 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00936 08 10854096 10855075 Aip08g01478 08 24796655 24797858 ECH
Aip08g00936 08 10854096 10855075 Aip08g00936 08 10854096 10855075 ECH
Aip08g00936 08 10854096 10855075 Aip10g00428 10 4231387 4232909 ECH
Aip08g00936 08 10854096 10855075 Aip03g03805 03 120412750 120414482 ECH