Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00933 ATGAGATTTGACATGGTTCCCAGTGAAAGATTCAAGCTTTGTATAAGAATTGCATTTGGGTGGTGGATTTTTCTACTGTTTCTTCCCTCTGTGACTGGTCTCAGACCCTTACGGGAAAGAACTCGTTCTTGGGGCGATGAGTGGCTTACAAGAAAAGATGAGACTGATAGTGGTCCATTTTCACAATGGAACATAACTGGAACTTATAGAGGGAGTTGGAAGTTTTCAGATGCCGCAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAACTGGTAATTCTGTAATTGAATTAGTTAGTACACCAACGAAGATAACTGGAGTACATTACGTTCAGGGGGTTATTATATTCCATGATGTGTTTGACAATGAATATAATGTTGGTGGTGCCCAGATCAGAGTGGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAATTGAATCAGGATGGAGATTATATTTTATCCAATCCATACCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCCCGAGATAAGATGTGGAGAAAGAAACATTCTCCAATGCATGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGCTTTCACGCTTACCATCAACCAAAAATGAAGGAGAACATGATCGTTTTCACCTCGAAGGTTTGATGGAGAGTCCCTCCACGGATGATGATGGGGACTGTTTCTCACCTTTACTGTTAAATACAACTTCTGTCAACATTGAGGTGTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTTCTTCTACTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGAGCTGCTAAGGTTTCAATATTGTTAATTGGCCAGCAGGCGATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTCGTCTTTTCAATATTTGAGATGAGATATCTCCTCACCATCTGGAAGGCAAATAGGCCTTTGAGTAGCGGAGAAGGTTGGGAGGCAATGAGGCGCGAACTTTCCGTCTTATATAGCCGTTTCTATGGAATCCTGTTAGGAGGCATTCTCCTCATGTACGAGTTCCATCACCATTTGAGACCTATTCTTCTTCTTATATACTCCTTTTGGATACCTCAGATAATCACCAACGTTATCCGTGACTCGCGCAAGCCGCTGCATCCTCATTATATCCTTGGGATATCTGTTACTCGCTTAGCAATCCCGCTATATGTTTTTGGTTGCCCAAACAACTTCATGCGCATACAGCCGGACAAGAGCTGGTGTGTTTCGTTGGCTGCATTTATTGGCCTTCAAGCTTCAGTTCTTCTTCTTCAGCATTATCTCGGCTCACGGTGGTTCATCCCTCGCCAGATACTACCTGAGAAGTACAGCTATTATAGGAGGTTTAATCAAGATCCAAGACACGCTATGGATTGTGTTATTTGCATGACATCCATTGATCTTAATCAACGGTCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTCTGCAAAGATGGATGGACATAAAGATGGAGTGCCCAACTTGCCGGCGCTCGCTACCGCCTGCATAA 1689 0.4198 MRFDMVPSERFKLCIRIAFGWWIFLLFLPSVTGLRPLRERTRSWGDEWLTRKDETDSGPFSQWNITGTYRGSWKFSDAANGSSRFPDIRKTTGNSVIELVSTPTKITGVHYVQGVIIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVANSGKEGELNQDGDYILSNPYHLLGVFSSQVLQDSSRDKMWRKKHSPMHDMEKHCNIEIAAQLSRLPSTKNEGEHDRFHLEGLMESPSTDDDGDCFSPLLLNTTSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILLIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLTIWKANRPLSSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHHHLRPILLLIYSFWIPQIITNVIRDSRKPLHPHYILGISVTRLAIPLYVFGCPNNFMRIQPDKSWCVSLAAFIGLQASVLLLQHYLGSRWFIPRQILPEKYSYYRRFNQDPRHAMDCVICMTSIDLNQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00933 562 PANTHER RING ZINC FINGER PROTEIN 8 562 - -
Aip08g00933 562 SMART ring_2 512 555 IPR001841 -
Aip08g00933 562 ProSiteProfiles Zinc finger RING-type profile. 512 556 IPR001841 -
Aip08g00933 562 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 562 IPR013083 -
Aip08g00933 562 SMART ringv_2 511 556 IPR011016 GO:0008270
Aip08g00933 562 SUPERFAMILY RING/U-box 495 560 - -
Aip08g00933 562 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 8 562 - -
Aip08g00933 562 Pfam Ring finger domain 511 556 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00933 512 559 C3H Transcription Factor Family AT4G12190 39.583 5.51e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00933 K23788 - gmx:100785460 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00933 08 10810737 10816395 Aip08g00933 08 10810737 10816395 ECH