Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00924 ATGGATCATCATCATCAGCAGCAGCAGCAACAAGGAAGTGAACCTTCTACAACAACCAAAGTTGAAAGAAAGATCATAGAGAGAAACAGAAGAAATAAAATGAAGGATCTCTACTCCAAACTCAACTCTCTTCTCCCAAGCTATAGCCCTACGGAAGTGTTACCATTGCCTGATCAAATAGATGAAGCTGTGAAATATATCAAAAGCTTAGAGAAGAAGGTGAAGATGGCAAAGGAGAAGAAGGAGAGGTTGCTAAAAGGGAGGAATAACAACAAGAGATCTCGCGGTTTCGATGAGAAAAATATTACAAAATCTCCAACGATAGATGTTCATGAAATGGGTAATTCCTTGCTTCAAGTGGTTTTGACATGCGGGTTTGAGAACAAGTTTCTTTTCAGTGAGATTATTCGCATATTGCATGAGGAGAAGGTTGAGGTTGTTAGTGCCAATTCTTCTTCACATGGAGATTCAATGATTCATGTTTTACATGCAGAGGTAATTAATTAG 507 0.3846 MDHHHQQQQQQGSEPSTTTKVERKIIERNRRNKMKDLYSKLNSLLPSYSPTEVLPLPDQIDEAVKYIKSLEKKVKMAKEKKERLLKGRNNNKRSRGFDEKNITKSPTIDVHEMGNSLLQVVLTCGFENKFLFSEIIRILHEEKVEVVSANSSSHGDSMIHVLHAEVIN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00924 168 Gene3D - 6 97 IPR036638 GO:0046983
Aip08g00924 168 SMART finulus 24 76 IPR011598 GO:0046983
Aip08g00924 168 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 16 166 IPR015660 GO:0003700|GO:0006357
Aip08g00924 168 Coils Coil 60 87 - -
Aip08g00924 168 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 16 166 - -
Aip08g00924 168 MobiDBLite consensus disorder prediction 1 32 - -
Aip08g00924 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 87 IPR036638 GO:0046983
Aip08g00924 168 Pfam Helix-loop-helix DNA-binding domain 20 71 IPR011598 GO:0046983
Aip08g00924 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 18 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00924 Aip-Chr8 10456758 10457545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00924 21 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.645 7.61e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00924 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00924 - - aip:107610492 300.056