Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00923 ATGGCTCATCAGCAGAGAGGTCAAGCTTCTTCTTCAACCAAAATGGAAAGGAAGATCATAGAGAGAAACAGAAGAGAACAAATGAAGAACCTTTGTTTCAAGCTCAATTCTCTTCTCCCTAACTTCAACCCCAAGCAAACATTGCCACCACGTGTTGACCAAATAGATGAGGCCATCATCTACATCAAAACCCTAGAATCAAGGGTTGAGATTGCTAAGGAGAAGAAAGAAAGCTTATTAAACAAGGGAATGAAGAAGAGACCTCATGATTTAGCAGGTAGCAGTGCCTTTGATGATGAGACTCAAGGAACAAGCCTAAAACCCCCAACTATTGAGATTCATGAACGTGGTTCCATGTTAGAGATAGTTCTTATGATTTCTGGCTTTGATAACCAATTCATCTTCAGTGAAATTATTCGCATATTGCATGAAGAGAATATTGAGGTCCTTAGTGCAATTTCTTCTCGCGCTGGAGATTCAATGATTCATGTTGTGCACGCAGAGAATCATCTCTATCAATTAGGAGCAACGAAAGAAATAAGTGAGAGATTAAAAAGGTTTGTGGACGCACATTGTTTGCAGGACATTCAAGGGGCACAGGGGCCATAA 609 0.4039 MAHQQRGQASSSTKMERKIIERNRREQMKNLCFKLNSLLPNFNPKQTLPPRVDQIDEAIIYIKTLESRVEIAKEKKESLLNKGMKKRPHDLAGSSAFDDETQGTSLKPPTIEIHERGSMLEIVLMISGFDNQFIFSEIIRILHEENIEVLSAISSRAGDSMIHVVHAENHLYQLGATKEISERLKRFVDAHCLQDIQGAQGP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00923 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 65 IPR011598 GO:0046983
Aip08g00923 202 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 194 IPR015660 GO:0003700|GO:0006357
Aip08g00923 202 MobiDBLite consensus disorder prediction 85 108 - -
Aip08g00923 202 Pfam Helix-loop-helix DNA-binding domain 14 66 IPR011598 GO:0046983
Aip08g00923 202 SMART finulus 18 71 IPR011598 GO:0046983
Aip08g00923 202 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 194 - -
Aip08g00923 202 Coils Coil 62 82 - -
Aip08g00923 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 82 IPR036638 GO:0046983
Aip08g00923 202 Gene3D - 4 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00923 Aip-Chr8 10380635 10382182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00923 2 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.458 1.22e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00923 HLH 7.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00923 - - gmx:100805461 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00923 08 10380635 10382182 Aip08g00923 08 10380635 10382182 ECH
Aip08g00923 08 10380635 10382182 Aip03g01764 03 21854571 21855684 PCT