Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00916 ATGGAGCCGCTGCTGAGAGGCGAAGGGAGTGGTGGCCGGAGGGACCACGCGCGGGGGATATTCCGCCGCTCCGACGCCATCACCTACGGCTCCAACTATGAGAAAGCTGCTGCACTCGTCGATCTGGCTGAAGATGGTGTTGGACTCCCTGAGCAAATTCTTGATTCTTCAAGCTTTCAAAGTTCTTCAAGATATTATTTCATTTTCATTAAATGCAATATCATGTGGTCTCTTGCTTATTTTGCTTTGATAGTCCTAAATTTCTTGGAGAGACCTCTGTGGTGTGAAAATTATACCAAACCATCTTGCAGCGATAGAGAGTATTTCTTTCTGGGACAGTTGCCATATCTAACTAATGCAGAATGTCTTATTTATGAGGGATTAACTGTTGTGGTGCTAATCATACATACTTTCTTCCCAATATCATATGAAGGGTCCCGTATATATTGGAGAAACGCAATTAATCTGTTGAAGGTCTTCTGTCTGTTAGTTCTCATTGCTGATATGCTGGTTTATGCTATTTACTTGTCTCCAGCGGCTTTTGATTTTCTACCTTTCAGAGTTGCTCCTTATATCAGGGTTATTCTTTTCATTCTGAATATTAGGGAGTTACGTGAAACCATCACTATCTTGAGTGGCATGGTTGGCACATACTTGAATGTCTTGGCTCTGGGGCTTCTGTTTCTTCTTTTTGCAAGCTGGGTGGCTTATGTGATGTTTGAGGATACTATACAAGGAAAAACAGTATTCACTTCTTATGGTGCTACATTGTATCAGATATTTGTTTTATTTACTACATCGAATAATCCAGATGTTTGGGTGCCTGCATACAAGGCTTCACGTTGGTATTGCCTGTATTTCATTATATTTGTTCTTTTGGGGGTTTACTTCGTTACAAACTTGGTCCTTGCCGTTGTTTATGATAGTTTCAAGAGTGAGCTTGTGAAACAAGTTTTCGAGATGGATCGTATGAGAAGAGCAATGTTGGAGAAAGCTTTTAATCTCTTAGATACTCATAGTACTGGATATCTTAACAAAGATCAATGCATTAGGCTCTTTGAGGAGTTGAACAAATACAGGACTTTACCCAAGATCACCAAGGAAGAATTTGAGTTAATATTTGATGAGCTTGATGATAGTCGTGACGTAAAGCTCAATAAGGATGAATTTGCTGATATTTGCCATGCCATTGCTTTAAAATTCCAGAAGGAGGATTCTATCTCTTACTTTGAGTATTTACCATTCTACAATTCACCCACCTCAAAGCATTTGAAAGAATTTGTGAAGAGACCCATCTTTGGATACCTAGTCTCTTTTCTTCTCGTACTCAATCTAGTTGCAGTTATTATTGAGACAACGCTTGATATACAAAATAATTCTGGTCAAAAGGTGTGGCAAGTGGTTGAGTTCATTTTTGGGTGGATATATGTAATAGAAATGGCTCTGAAGGTTTATGCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAATCGCTTTGATTTTGTTATCACTTGGATAATTGTCATTGGAGAAACTATAACTTTTGCTTCGCCTGATGATCAGACTTTCTTCTCAAATGGAGAATGGATCCGTTACCTTCTTCTGGCAAGAATGTTGAGGTTGATAAGGCTCCTAATGCATGTCAAGCAATTCCGAGGCTTTGTTGCAACTTTCTTAACGCTGTTGCCAAGTTTGACGCCATACTTTGGGATCATATTTTGTGTCTTATGTATTTATTGCTCGGTTGGTGTACAGATTTTTGGTGGACTTGTTAATTCTGGAAACCCTAAATTGCTAGCATCAGATCTTGCTGATAATGACTATTTGCTATTTAATTTCAATGATTATCCTAATGGAATGGTGACACTTTTCAATTTGGTAGTCATGGGGAACTGGCAAGTATGGATGCAGAGCTACAAGGAGTTAACGGGTACTTCTTGGACCTACGTATACTTCATAAGTTTCTACTTAGTCACGGTTTTGCTACTTTTGAACTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGAGCTTGAGTCACCGGACACCTGTGATGAACAGGACAAGGAAGTTGAAGGAGATAAATATCGAAGACGATCAGTTGGGTATGTATAG 2127 0.393 MEPLLRGEGSGGRRDHARGIFRRSDAITYGSNYEKAAALVDLAEDGVGLPEQILDSSSFQSSSRYYFIFIKCNIMWSLAYFALIVLNFLERPLWCENYTKPSCSDREYFFLGQLPYLTNAECLIYEGLTVVVLIIHTFFPISYEGSRIYWRNAINLLKVFCLLVLIADMLVYAIYLSPAAFDFLPFRVAPYIRVILFILNIRELRETITILSGMVGTYLNVLALGLLFLLFASWVAYVMFEDTIQGKTVFTSYGATLYQIFVLFTTSNNPDVWVPAYKASRWYCLYFIIFVLLGVYFVTNLVLAVVYDSFKSELVKQVFEMDRMRRAMLEKAFNLLDTHSTGYLNKDQCIRLFEELNKYRTLPKITKEEFELIFDELDDSRDVKLNKDEFADICHAIALKFQKEDSISYFEYLPFYNSPTSKHLKEFVKRPIFGYLVSFLLVLNLVAVIIETTLDIQNNSGQKVWQVVEFIFGWIYVIEMALKVYAYGFENYWRDGQNRFDFVITWIIVIGETITFASPDDQTFFSNGEWIRYLLLARMLRLIRLLMHVKQFRGFVATFLTLLPSLTPYFGIIFCVLCIYCSVGVQIFGGLVNSGNPKLLASDLADNDYLLFNFNDYPNGMVTLFNLVVMGNWQVWMQSYKELTGTSWTYVYFISFYLVTVLLLLNLVVAFVLEAFFAEMELESPDTCDEQDKEVEGDKYRRRSVGYV 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00916 708 SUPERFAMILY EF-hand 314 397 IPR011992 -
Aip08g00916 708 SMART efh_1 328 356 IPR002048 GO:0005509
Aip08g00916 708 SMART efh_1 369 397 IPR002048 GO:0005509
Aip08g00916 708 Gene3D - 556 704 - -
Aip08g00916 708 Pfam EF-hand domain pair 329 393 IPR002048 GO:0005509
Aip08g00916 708 CDD EFh 328 393 IPR002048 GO:0005509
Aip08g00916 708 Gene3D - 423 555 IPR027359 -
Aip08g00916 708 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Aip08g00916 708 Gene3D - 311 394 - -
Aip08g00916 708 Pfam Ion transport protein 431 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip08g00916 708 Pfam Ion transport protein 76 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip08g00916 708 Gene3D - 203 310 - -
Aip08g00916 708 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 2 706 IPR044581 GO:0005245
Aip08g00916 708 ProSiteProfiles EF-hand calcium-binding domain profile. 324 359 IPR002048 GO:0005509
Aip08g00916 708 SUPERFAMILY Voltage-gated potassium channels 430 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00916 Aip-Chr8 10139801 10151534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00916 2 706 Ion Channels AT4G03560 67.610 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00916 K16900 - gmx:100806160 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00916 08 10139801 10151534 Aip08g00916 08 10139801 10151534 ECH