Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00900 ATGCAGCTCCACCACCGTGTCACCGCCGTGTCAGTTTTGATATTTTGCTTCGGAGTGATGTTAGTTTGCGGCCAGAAACAACGGCCACAGCACCGCATCCTCGATCCACATTGGCATGCTGGCACCGCCACGTGGTACGGCGATCCCGAAGGAGACGGTAGCACCGGAGGGGCGTGTGGATATGGAACGATGGTGGATGTGAAGCCGTTGAAGGCGAGGGTGGGTGCGGTGGGGCCGGTGCTGTACAAGAACGGGGAAGGGTGCGGAGAATGCTACAAGGTGAAGTGCTTGGACCCAACCATATGCTCCAAGCGAGCGGTGACGGTTATAATCACGGACAAGTGCCCTGGTTGTCCCTCTGATCGAACCCACTTTGACCTCAGCGGTGCCGCATTTGGCCGAATGGCGGTTTCCGGCGAGAATGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATATACCAAAGAACAACTTGCACATATCCAGGCAAAAACATTGCCTTCCGTGTCAATGAAGGTTCTACACCCTTTTGGCTATCACTCTTGGCAGAGTGGGAGGATGGAGATGGAGACATCAGCTCCATGCATATACAAGAAGTAGGGTCAAGTGAGTGGCTGGAAATGAAACATCTGTGGGGTGCAAATTGGTGCATCATTGCGGGTCCTTTAAGAGGACCTTTCTCAGTTAAACTAAGCACATCGTCAGGGAGAAGCCTCACTGCCAGGGATGTTATTCCAAGCAACTGGTCACCAAAAGCCACTTATACCTCTCGCTTGAATTTCATTCCTTAG 792 0.5278 MQLHHRVTAVSVLIFCFGVMLVCGQKQRPQHRILDPHWHAGTATWYGDPEGDGSTGGACGYGTMVDVKPLKARVGAVGPVLYKNGEGCGECYKVKCLDPTICSKRAVTVIITDKCPGCPSDRTHFDLSGAAFGRMAVSGENGQLRNRGEIPVIYQRTTCTYPGKNIAFRVNEGSTPFWLSLLAEWEDGDGDISSMHIQEVGSSEWLEMKHLWGANWCIIAGPLRGPFSVKLSTSSGRSLTARDVIPSNWSPKATYTSRLNFIP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00900 263 SMART dpbb_1 74 154 IPR007112 -
Aip08g00900 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Aip08g00900 263 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Aip08g00900 263 Pfam Expansin C-terminal domain 166 246 IPR007117 -
Aip08g00900 263 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576|GO:0019953
Aip08g00900 263 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Aip08g00900 263 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Aip08g00900 263 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Aip08g00900 263 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Aip08g00900 263 PRINTS Major pollen allergen Lol pI signature 233 250 IPR005795 GO:0005576|GO:0019953
Aip08g00900 263 Gene3D - 160 258 IPR036749 -
Aip08g00900 263 SUPERFAMILY Barwin-like endoglucanases 35 163 IPR036908 -
Aip08g00900 263 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Aip08g00900 263 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Aip08g00900 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Aip08g00900 263 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Aip08g00900 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Aip08g00900 263 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Aip08g00900 263 Pfam Lytic transglycolase 79 153 IPR009009 -
Aip08g00900 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 164 IPR007112 -
Aip08g00900 263 Gene3D - 24 159 IPR036908 -
Aip08g00900 263 PANTHER EXPANSIN-LIKE PROTEIN B1 15 263 - -
Aip08g00900 263 PANTHER EXPANSIN-B3 15 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00900 Aip-Chr8 9882909 9885445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00900 10 199 Expansin Gene Family AT4G28250 64.062 2.40e-87 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00900 K20628 - gmx:100780112 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00900 08 9882909 9885445 Aip08g00900 08 9882909 9885445 ECH