Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00887 ATGTCATTAAACTGGAAGAAGGATGAAAGTCAAGAAACTGATTTCAAGGATGCAGCTGAAGTCTGTTTACCTTTGATAAATGCAGCTATCAGGGATGTTGAGAAAGGAACTTTTTTCAAAAGTTGCTTTTTGAATATAGAAATTCCCACATCACCTTCAAAGAACAAGGGCTTCAAATTAACTAAGCAAAGTACGTGGAGATCCACGCCAAGCTGGCTAGCTGTGTCACAGCTAGCCGTTATCCATCTGGTTTCTTATCTCCATCCACTCAGCCAGCCAAGGATTACGACTCCTACTTACCTCTACTGCCACCGAAAGTCATCACGGCGATCATCTCAATGGTTCACAAGGTTCGGCATGGCACCTACTAGACAAGTCTTCAAGCCCAGATCTCCATCATTATCTAATTCCGTATGGCTGAGGAGTCTGATGAATGCTGAAAGTGATATTCCTTTGGGTCCTAAGGCCCGGTTACTGTGCCGTCTGAAAATGCTTCATCAGAATGGATTGGACCCAACTTCTTTTAGGTGTGGGATCTCTGGTGCTGTGACATTCAACCAATCAGAGAATGCAACGTTCCAAAACATCAATTCAGCTTCACATGTCTTGGTGCTACCTCATCACCTTTATTTATTGCCCACTTATTTCCCTCTAACCAATCCAACACCAACACCAAGAACCAAAACACATACATACATGGAGACTGTTATTTCCAACCAATCCCCACCAACTATCCTCAAGAGTGTGAAGGACAAAGAGGAGGAGGAATCATTGCTTGGACAAGCGGAGATATGGAAGTACATGACATGCTTTACCGACTCCTTTGCCCTAAAATGCGCCGTTGAACTCCGCATCGCCGACATCATAGACCGCTACGGCAAGCCCCTCTCCCTCTCCAAGATCATCGACAACATCGAGGACGCCCCGTCCCCGGACGCCTCTCTCCTCCTCCGCATCATGAGAGTCCTTGTCCGCAAGAAGATCTTCTCCGCCGCCAAGTCCGACAACGGAGAGATCCTCTACGGCCTGACACGCGCTTCCAAGTGGATCCTACAAGACACCAAGATGACCCTCGCACCAATGTTGCTCTTAGAGAATCACCCTCTTCACCTCAACCCTGCACACTTCATCAGTGATATCATCAGGGAAGGAACTGACAAGGGAACCGCCTTCTTCAGGTGCCATGGACACGAGCAATTCGACTTGACCGGATTGGACCCAGAGTACAACAAGTTGTTCAACGAAGGTATGGTGTGCACGGCAAGGATGGTGATAAAGGCTGTGATCGAAGGGTACAAAGAAGGATTCAACAAGATTGAGTCACTAGTTGATGTGGGTGGTGGACTTGGTGGTTCACTCTCTGAAATTGTGAGGGCTTACCCTCACATCAAGGGTATCAACTTCGACTTGCCGCATGTTGTTGCCACCGCCCCTCAGTACGACGGGATCACTCACGTTGGAGGTGACATGTTCGTCTCTGTTCCCAAAGCCGATGCCATTTACATGAAGTGGATTCTGCATGATTGGAGTGACCAACACTGCATAAAGATCTTGAAGAACTGTAGGAAGGCAATACCAGAGAACGGGAAGGTGATAATTGTGGACCATGTTCTGCAGCCAGAAGGAAACGATCTATTCGACGACACCGGCTTCGCTTTCGACATGATGCTTCTTGCACACAATGCCGGAGGAAAGGAAAGGACTGAGGAGAATTGGAAATGGCTGTTTGCTGAAACTGGATTCCCTCGTTACAACATCATCAAGATCAAGGCCCTTCCATCCATCATTGAGGCCTTCCCAAATTAA 1806 0.4751 MSLNWKKDESQETDFKDAAEVCLPLINAAIRDVEKGTFFKSCFLNIEIPTSPSKNKGFKLTKQSTWRSTPSWLAVSQLAVIHLVSYLHPLSQPRITTPTYLYCHRKSSRRSSQWFTRFGMAPTRQVFKPRSPSLSNSVWLRSLMNAESDIPLGPKARLLCRLKMLHQNGLDPTSFRCGISGAVTFNQSENATFQNINSASHVLVLPHHLYLLPTYFPLTNPTPTPRTKTHTYMETVISNQSPPTILKSVKDKEEEESLLGQAEIWKYMTCFTDSFALKCAVELRIADIIDRYGKPLSLSKIIDNIEDAPSPDASLLLRIMRVLVRKKIFSAAKSDNGEILYGLTRASKWILQDTKMTLAPMLLLENHPLHLNPAHFISDIIREGTDKGTAFFRCHGHEQFDLTGLDPEYNKLFNEGMVCTARMVIKAVIEGYKEGFNKIESLVDVGGGLGGSLSEIVRAYPHIKGINFDLPHVVATAPQYDGITHVGGDMFVSVPKADAIYMKWILHDWSDQHCIKILKNCRKAIPENGKVIIVDHVLQPEGNDLFDDTGFAFDMMLLAHNAGGKERTEENWKWLFAETGFPRYNIIKIKALPSIIEAFPN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00887 601 Gene3D - 246 350 IPR036388 -
Aip08g00887 601 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 252 600 - -
Aip08g00887 601 PANTHER O-METHYLTRANSFERASE 252 600 IPR016461 GO:0008168
Aip08g00887 601 Pfam O-methyltransferase domain 378 581 IPR001077 GO:0008171
Aip08g00887 601 Pfam Dimerisation domain 276 324 IPR012967 GO:0046983
Aip08g00887 601 Gene3D - 1 82 IPR036523 GO:0016787
Aip08g00887 601 Gene3D Vaccinia Virus protein VP39 352 601 IPR029063 -
Aip08g00887 601 SUPERFAMILY "Winged helix" DNA-binding domain 254 353 IPR036390 -
Aip08g00887 601 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 356 598 IPR029063 -
Aip08g00887 601 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 265 600 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00887 Aip-Chr8 9726156 9737189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00887 275 587 Monolignol Biosynthesis Gene Families AT5G54160 41.433 4.56e-78 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00887 K22588 - gmx:100800801 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00887 08 9726156 9737189 Aip08g00887 08 9726156 9737189 ECH