Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00877 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGACTTTGGGTTGTACCCTCTTTTGGTAACCATAAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTAGAAAAATGCAAGCTACAGTCAAGAAACCACTGCTTAATAGGTTTAGAGATCATATAGTTGAAGGACAAGTTTATAGAATGGCATATTTTACTATTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTTCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTCATCCCTAAGACTTGTTTCAACATGTTTTCTTTTTCTGAGTTGTTGAACATGACCCAAGATTATGATTTCTTAGTTGATGTCATTGGTCTTTTAACTTCAGTCGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTAAAAATGATTGCATTAGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTTAATCAAGTGAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTGGTGATTCAGCTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATATTCCTGAAGTTGTTGAGTTCAGGCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCATCCGCTGTTTATTGCAAATGAGGGTAAAGTTCTCTCATTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTGCAATTCAAGGTATTGTTGAGGATGGAGGTTGGTGGAGGTTTTTAGCAACCCAGGTATACTGGCCCAGCGAAAAAGAACTGGTTTTTAGATTTCGCGTTTTCAATAAGCAGGGTGATAGAGCTCTTCCCCCAAATTTTGTTTCAACTCATGGGGAACGATTGGGGCTAATGTTCTATGTCATTGACGAGTTAGATAATTGTTTAGTGCTGGAGGTGGATAACCAACCCATCCGAGTTCACCTTGATCCTGACTTCTATGTTCCTAAGCTAATGGACCCAGAGACACTTGATAATGTATCAAGAGTGTTCCACATAAAGTACACCAGGATGGATGAGGACTCATCAGCTGATGTGATTGTTCTCTCCGGGTCTGGACCATCGGATGATCAGTTTTCATCAGATGCTGATGAAGACAATGATCAAAGTGGGGCACTGGTAGGGGATAATCCCAATGATCCGATAGATTTGTCTAGTGGAAGTAGTTTATCATTGGAGGTTAATGAACAAAGTCATGCGGCAAACGAGTTGGTTGATCCTAGATACTCTCCAGAGGTTTCTTATGAAAAGAAAATCACAGCTTCGGATGTTGCACAACCTAGATTGTATTTGGCTTCAAAATTCGCTGCGTATCTTAAACTGTGTGGAGATGGCTCAATTTGGATAATCACTGGTCTAGATTCTAATGTAGAGAAGAATGTCTTCTTCCACTTACTGAAAAGTGGAGGAAGAGGTGGAGAATGGAAATTTGGAGTTGGGTGGAGGGAATGTTGTAGAATATACAACTTAAAGGAGGGTGATATCATTACTTTGAAACTCGGCTCGATAGCTAGACGGCAGATAGAGTTATCGATCTAG 1734 0.3973 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHKVPNSMEMILLDEHCRKMQATVKKPLLNRFRDHIVEGQVYRMAYFTIVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFSFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVNGTHPLFIANEGKVLSLEDDFMRLTRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWRFLATQVYWPSEKELVFRFRVFNKQGDRALPPNFVSTHGERLGLMFYVIDELDNCLVLEVDNQPIRVHLDPDFYVPKLMDPETLDNVSRVFHIKYTRMDEDSSADVIVLSGSGPSDDQFSSDADEDNDQSGALVGDNPNDPIDLSSGSSLSLEVNEQSHAANELVDPRYSPEVSYEKKITASDVAQPRLYLASKFAAYLKLCGDGSIWIITGLDSNVEKNVFFHLLKSGGRGGEWKFGVGWRECCRIYNLKEGDIITLKLGSIARRQIELSI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00877 577 MobiDBLite consensus disorder prediction 412 445 - -
Aip08g00877 577 CDD RPA1_DBD_B_like 140 243 - -
Aip08g00877 577 SUPERFAMILY DNA-binding pseudobarrel domain 477 566 IPR015300 -
Aip08g00877 577 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Aip08g00877 577 CDD RPA1_DBD_A_like 19 107 - -
Aip08g00877 577 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 324 - -
Aip08g00877 577 Gene3D - 459 577 IPR015300 -
Aip08g00877 577 Gene3D - 4 112 IPR012340 -
Aip08g00877 577 PANTHER REPLICATION FACTOR A 1, RFA1 22 324 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g00877 577 Gene3D - 114 250 IPR012340 -
Aip08g00877 577 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Aip08g00877 577 Pfam Domain of unknown function DUF223 43 132 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00877 Aip-Chr8 9595389 9599961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00877 2 412 Core DNA Replication Machinery Family AT5G45400 21.412 1.65e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00877 - - ahf:112717561 560.451