Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00844 ATGGCTCCTGAGAACGACAACTATGATGAGGTGAAGATCATAGAAAATTGTCAAGTTGCTCCACCACAAGGCTCTCTTCCCTCAACCACACTTCCCTTCACTTTCTTCGATATTCAATGGTTCCTTTGCCACCCCGTCAAGCGCATCTTCTTCTATGACTTCCCTTACCCTACCAACCACTTCCTTCAAGCATCACTCCCTCCTCTCAAACACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTTTCACGGTTGCGGAGTCCAAAGCTGATTTCAATCTTCTTGTATCTGATTCACCACAAAATGCAAGAGATTGGCACCCTTTTGTTCCTTCTTTGCCTCCACAAGATACCTTAGAGAATGGCACTCGTGTGATCCCTTTAATGGCGATTCAAGTAACCATGATACCGAATTCTGGATTCGCTATTTGTCTCACTTTCAACCACCTTGTTGCGGATGGCAAGTCTCTTCATCATTTCATAAAGTTTTGGGCCACACTTTGCAAGGAGATAGTAACAAAAGGAGGTAATAACTTAGGCTCCTTTCTTGAAGGGTCTAATAGTAATTTAACCCTACCTTCCCATGATAGAAACATGGTTAAAGACCCAAAAGGGCTGAAGCAAGTTTTCTTGGAAGAGCTGAAAAAATCTTATTTTGAGAGCTTGGAATTCCGAGGGCTTGTGAAAGATGTTTCTACCAACAAGGCACGTGGTACGCTCGTGGTGACACGTGACCAAGTTGACAAATTAAAAAAATGGGTGTCGCTTAAATATAGCGACACCTATGGTGATAACTGTGAGTCATTGCAACACATTTCAACCTTTGTTGTCACAAGCTCTTTGGTTTGGGTTAGTATAATGGAATCAGAAGAACAATGCAATAATAATAAGTATGATGAAAATTGCCATTTGGTGTTTCTAGCTGATTGCCGTGGCCATGTTGAATTTTGTGTACCTCAAAATTACTTTGGAAATTGTCTAGACTCTGGGTTTGTGACATTCAAAAGGGGTGACATATTAGGAGAAAATGGGATTGTTAGGGTGGCAAGTGCAATTGAGAGTGAAATTAGAGAGTTGAAAAGAGAAGCATATAGAGATGGTGAAAATGTGATGGAAAGGTATAAGGAATTAGCTACGTCTGGAGAAAGTTTAATCATAGTTGCAGGGTCACCAAGGTTGGGAGTGTATGAAACTGATTTTGGATGGGGGAAGCCTAGGAAATCTGAAGCGGCACATCTTGAATCATCAGGGTCAATTTCTCTTTCTGATAGTAAGAATAAAGAAGGGGCGATTGAAATTGGATTTTCACTTGAATGGCCTCGAATGAATCTATTCATCAACATCTTTGAACAACACATCAAAAGTGTTCATCAAACTTTGTCAATGATGACCAATTTGAATTGA 1545 0.3612 MAPENDNYDEVKIIENCQVAPPQGSLPSTTLPFTFFDIQWFLCHPVKRIFFYDFPYPTNHFLQASLPPLKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFTVAESKADFNLLVSDSPQNARDWHPFVPSLPPQDTLENGTRVIPLMAIQVTMIPNSGFAICLTFNHLVADGKSLHHFIKFWATLCKEIVTKGGNNLGSFLEGSNSNLTLPSHDRNMVKDPKGLKQVFLEELKKSYFESLEFRGLVKDVSTNKARGTLVVTRDQVDKLKKWVSLKYSDTYGDNCESLQHISTFVVTSSLVWVSIMESEEQCNNNKYDENCHLVFLADCRGHVEFCVPQNYFGNCLDSGFVTFKRGDILGENGIVRVASAIESEIRELKREAYRDGENVMERYKELATSGESLIIVAGSPRLGVYETDFGWGKPRKSEAAHLESSGSISLSDSKNKEGAIEIGFSLEWPRMNLFINIFEQHIKSVHQTLSMMTNLN 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00844 514 Gene3D - 279 503 IPR023213 -
Aip08g00844 514 Pfam Transferase family 154 497 - -
Aip08g00844 514 PANTHER - 129 504 - -
Aip08g00844 514 Gene3D - 125 269 IPR023213 -
Aip08g00844 514 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 11 71 - -
Aip08g00844 514 Gene3D - 6 72 IPR023213 -
Aip08g00844 514 Coils Coil 69 71 - -
Aip08g00844 514 PANTHER - 11 71 - -
Aip08g00844 514 PANTHER COUMAROYL-COA:ANTHOCYANIDIN 3-O-GLUCOSIDE-6''-O-COUMAROYLTRANSFERASE 1-RELATED 129 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00844 Aip-Chr8 9041407 9043027 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00844 141 492 Monolignol Biosynthesis Gene Families AT5G48930 21.925 1.45e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00844 - - ahf:112707065 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00844 08 9041407 9043027 Aip08g00844 08 9041407 9043027 ECH