Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00839 ATGGCACAAATGGAAAATTCTAGCGATAATATTAATAAGCTAGTTGAGCATCAATTTCAAGTTGGTGTAGTAGCATCCATTGAAAATGATGCCAAAATCAATAATAAGTCTTTTCCCCTCACATTCCTTGACATACCCTTAGCTGGTCCAATCTATGTCAAACGCTTATTCTTCTACAAATTCCCTTTTTCCACCAGCCATTTTTACCAAACTACCCTTCCATATCTCAAGCGTTCTCTCTCACTCACCCTCCAAAGTTTCTTTCCTCTTGCCGGTAACCTCCTTTGTCCACCACCGCCACACAAGCCCTTCATTCAATGCACAAATGAAGACTCCGTGGCCTTCACCGTCGTCGAGTCTTCCTTGGATTTCAACCTTTTAGCAAGCAACAACCCAAAAAGCATCAATGATTTGCGTACCTTGGCTCCCAATCTGGTAGGCAAAGCCATGCATCATGATCATGATAGTGGTGACGACACACTCGTGTTTCCAATTTTGGCCTTGAAAGCCACGGTTTTTGCAAACCGTGGCGTTTGCATTGCCATAAATTATTGTCACGTGATGGATGATAGGTCTTGTGGCCAATTCATGAAATCTTGGTCTTCTCTTTGTGGAACAATAATAAGAAACGGTGAAGAAGTTGAATCAACGCTTCTAGACAAGTACCTACCACCACCGCCATGCTTCGATAGGGGAGTGTTGAAGGATCCGAAGGGACTCGAGTCCATTTTCTTGAATGATTATTTCGGTGAGTGGCAAACTTTCAAGGACAAAGTTGTTAGTCAAAGTCAAACTGGAAGTCTTCGAGCAGAAGAGGAAGAGGAATACGTTAAAGCAACAATCATATTTGGTAGAAAAGAGACAGAGGGAATGAAAAGGTTTGCGCTGAATGAGTTAAAGAAAAGCAACAGAAGCGAAGCGCCGCAATATTTATCATCTTTCGTTGTGACATGTGCTTTTTTATGGAGTACCCTGGTTAAAACAAAACACAGAGATGAAGAGGAAGAGGAAGAGGAAGAAGAGGATTGTATTCGTTTCCCAGCTGATGTTAGAGAGCGTCTAGAGTATCCGATTGCGGAGAATTACTTCGGAAACTGCATAACGAGATGCCATGCAACGCTGAAGAGGAAGGAGCTGAAAGGGGAAGGTGGGTTTGTGAATGCGGCAAGGGTTATTGACAAGGCTGTAAACGACATGAAGGAGGAGCCGTTTTGGGGTGCGGAGAATTGGAAGTCAACGTTTATCAAGTTGTTTGTGTTGGGGAATAGTGGGTTGCTTGTGGCTGGGTCCCACAAGTTCGGTGTGTATGACACTGATTTTGGGTTTGGAAGGCCTGTTAAAGTGGAAATGCTGCATTCATTCAGAGTTATGTCCATTGCGGAGACTGGTGACACTGAAAAAGGAGGGATTGAGTTTGGGATGGTGTTTAGAAAAGCTGAATTCCAGAGTTTTCAAGATAAGCTTCAACAAGGACTTCAAGTCTTTGCTTAA 1491 0.4319 MAQMENSSDNINKLVEHQFQVGVVASIENDAKINNKSFPLTFLDIPLAGPIYVKRLFFYKFPFSTSHFYQTTLPYLKRSLSLTLQSFFPLAGNLLCPPPPHKPFIQCTNEDSVAFTVVESSLDFNLLASNNPKSINDLRTLAPNLVGKAMHHDHDSGDDTLVFPILALKATVFANRGVCIAINYCHVMDDRSCGQFMKSWSSLCGTIIRNGEEVESTLLDKYLPPPPCFDRGVLKDPKGLESIFLNDYFGEWQTFKDKVVSQSQTGSLRAEEEEEYVKATIIFGRKETEGMKRFALNELKKSNRSEAPQYLSSFVVTCAFLWSTLVKTKHRDEEEEEEEEEDCIRFPADVRERLEYPIAENYFGNCITRCHATLKRKELKGEGGFVNAARVIDKAVNDMKEEPFWGAENWKSTFIKLFVLGNSGLLVAGSHKFGVYDTDFGFGRPVKVEMLHSFRVMSIAETGDTEKGGIEFGMVFRKAEFQSFQDKLQQGLQVFA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00839 496 Gene3D - 273 495 IPR023213 -
Aip08g00839 496 Pfam Transferase family 27 487 - -
Aip08g00839 496 PANTHER - 31 495 - -
Aip08g00839 496 Gene3D - 23 260 IPR023213 -
Aip08g00839 496 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 31 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00839 Aip-Chr8 8963680 8965480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00839 52 446 Monolignol Biosynthesis Gene Families AT5G48930 20.732 4.21e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00839 - - adu:107461989 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00839 08 8963680 8965480 Aip08g00839 08 8963680 8965480 ECH