Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00838 ATGGGAAGAGTACCTTGTTGTGACAAGAATAATGGACTCAAGAGAGGTCCATGGACACCAGAGGAAGATCTCAAGCTTGTCCACTACATCCAGAAACATGGACCTGGAAACTGGAGATCCCTCCCCAAGAATGCCGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTAGATGGACAAATTACCTAAGACCTGATATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAAACCATCATCCAGCTTCACAGCTTCATGGGGAACAAGTGGTCTGCAATAGCTGCGCGATTGCCAGGAAGAACGGACAATGAGATAAAGAACTACTGGAACACACACATAAGGAAAAGGCTGCTAAGAATGGGGATTGATCCGGTTACTCATGCGCCGCGACTCGATCTACTGGACATGTCCTCTGTATTAAGATCAGCTTTAGGGAACCCCTCATCAATTCTGAATCTGCAAGGCTTGTTGGTCAACCCTGAATTGCTGAAGCTTGTAGCCACTGCATCCCTATTATCTCATCAGACTCAGAATCTACCACAACTGATCAATGCTGGGGCGAATTCCGATTCTCAACAACTACTGAATCATCAGTTTCAGATACCAAATCAAACCACCAATGTGATTGACTTGGTGAGTAATAATAATTGTAACGCGATGAATAATTCATTTGCTACTACTCCTTCTTCATATCTTGGGGAGAATTTGAATGTGTCTCAGCAAAACCAAGTTGATTTGTTAGAGAATGAATTGTTACAGTACATAAACAATGGTAGTAGTGATCAAAACATGGGGTATGAATCGGTTATGTCGACGCCTCTGTCGACCCCAACAACAACGCCTTTGACTTCATCATCAACTTATGTGAATAGCAGCAACACAGAACAGGAAGAGAGGGACACCTATTGCAGTGAGCTTTTCAAATTAGAGATTCCAGAGAGTCTTGATATTAATGACTTCTTGTAA 966 0.4296 MGRVPCCDKNNGLKRGPWTPEEDLKLVHYIQKHGPGNWRSLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSFMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSVLRSALGNPSSILNLQGLLVNPELLKLVATASLLSHQTQNLPQLINAGANSDSQQLLNHQFQIPNQTTNVIDLVSNNNCNAMNNSFATTPSSYLGENLNVSQQNQVDLLENELLQYINNGSSDQNMGYESVMSTPLSTPTTTPLTSSSTYVNSSNTEQEERDTYCSELFKLEIPESLDINDFL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00838 321 PANTHER TRANSCRIPTION FACTOR MYB41 1 316 - -
Aip08g00838 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Aip08g00838 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 316 - -
Aip08g00838 321 Gene3D - 70 117 - -
Aip08g00838 321 Coils Coil 237 257 - -
Aip08g00838 321 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aip08g00838 321 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aip08g00838 321 Gene3D - 15 67 - -
Aip08g00838 321 CDD SANT 70 113 IPR001005 -
Aip08g00838 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip08g00838 321 SMART sant 67 115 IPR001005 -
Aip08g00838 321 SMART sant 14 64 IPR001005 -
Aip08g00838 321 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aip08g00838 321 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aip08g00838 321 CDD SANT 17 62 IPR001005 -
Aip08g00838 321 MobiDBLite consensus disorder prediction 270 297 - -
Aip08g00838 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00838 Aip-Chr8 8957531 8958650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00838 1 321 MYB Transcription Factor Family AT4G21440 52.247 4.17e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00838 Myb_DNA-binding 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00838 K09422 - gmx:102668351 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00838 08 8957531 8958650 Aip03g01664 03 19931078 19934082 PCT