Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00832 ATGGCGAGAACCCGTTGCGTTGACAAAAGTGGAATGAAGAAAGGTGCTTGGACTCCCGAAGAAGATAGCAAGCTAATTGCTTATATTACTAGGTATGGTTCCTGGAATTGGCGACAACTCCCTAGGTTTGCAGGTCTGGCAAGATGTGGAAAGAGTTGCAGATTGAGATGGCTCAATTATCTGAGGCCCAACATCAAACGAGGGAACTACACTCAAGAAGAAGAAGATATTATTGTTACAATGCACAAGAAGATAGGAAACAAGTGGTCTGTGATTGCATCCAATCTACCAGGAAGAACAGATAACGATATAAAGAACCATTGGCACTCCTCCCTCAAGAGGCGCTCTCATCGGAGAAACACACGTCAAAAGGTTAAGGCCACCGCCGCTGCCACCGCCCCTGCCGCTGCCGTTGCCGCAGTGAACACCACCACCAACCCTAATATTAATAATAACGCTTCACTCCAATATTCTCCTCAGACCTCTTCTGACACTGTCTCTGTCCCTTTGTCCCCTCAATTATCCTCCGCAATAATCACAACCAATAATCATAACGAAAATAATTCGGACTACTTTGACGACATCGATTTTTTGAATTATTATACACAGCACGCAATTGAAAATCTGTGGTCAGAGACATTTCTAGCTGAACAAATAGACAACTGTAACCGTGGTTTTGGTTCATCGGACACTACTAATACGCAGATCTCGGATTCTTCGGAATTGCTGTCTCCGCAATCATCATCATTATCAAGTGCAGAGAATAATGATAACTTATTTACCTTTGCAGAAACAACAGCGACAGCTTTTGATGAAGAGTTTTGGACAGAACATTATGCTGTGGATTTGTCTTGTGTTCCAAATGAACTACTTACGACTTCTGTGGACCCGTATGTTTGTCCTGTGGCTGTGTATGATGATTTAGATCTGTGGACTCAAAGCAATTTTACATGA 954 0.4287 MARTRCVDKSGMKKGAWTPEEDSKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTQEEEDIIVTMHKKIGNKWSVIASNLPGRTDNDIKNHWHSSLKRRSHRRNTRQKVKATAAATAPAAAVAAVNTTTNPNINNNASLQYSPQTSSDTVSVPLSPQLSSAIITTNNHNENNSDYFDDIDFLNYYTQHAIENLWSETFLAEQIDNCNRGFGSSDTTNTQISDSSELLSPQSSSLSSAENNDNLFTFAETTATAFDEEFWTEHYAVDLSCVPNELLTTSVDPYVCPVAVYDDLDLWTQSNFT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00832 317 Gene3D - 69 135 - -
Aip08g00832 317 CDD SANT 69 112 IPR001005 -
Aip08g00832 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip08g00832 317 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Aip08g00832 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip08g00832 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip08g00832 317 CDD SANT 16 61 IPR001005 -
Aip08g00832 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 262 - -
Aip08g00832 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip08g00832 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip08g00832 317 SMART sant 66 114 IPR001005 -
Aip08g00832 317 SMART sant 13 63 IPR001005 -
Aip08g00832 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip08g00832 317 Gene3D - 6 67 - -
Aip08g00832 317 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 262 - -
Aip08g00832 317 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00832 Aip-Chr8 8891897 8893423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00832 1 168 MYB Transcription Factor Family AT1G06180 48.333 9.92e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00832 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00832 K09422 - gmx:100777107 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00832 08 8891897 8893423 Aip08g00832 08 8891897 8893423 ECH
Aip08g00832 08 8891897 8893423 Aip03g01649 03 19580169 19580983 PCT
Aip03g01644 03 19405362 19406767 Aip08g00832 08 8891897 8893423 PCT