Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00830 ATGGTGAGAACCCCTTTGTGTGACAAGAGTGGAATGAGGAAGGGCACGTGGACAGCTGAGGAAGACAAGAAGTTGGTCGCTTATGTTACTAGGTATGGTTGCTGGAATTGGCGTCTTCTCCCAAAGTTTGCAGGTCTTGAAAGGTGTGGCAAGAGTTGCAGACTTAGGTGGATGAACTACCTCAGACCCAACATCAAAAGAGGCAACTACACTCAAGAAGAAGAGGATACTATCATCACACTTCACCAAAACCTTGGCAATAGATGGTCCCTAATTGCGGCGAATTTACCAGGAAGAACTGATAACGAGATAAAGAATCACTGGCACACTGTTCTGAAGAAGCGTATTCAAGACAAGTCGTCGTCCTCCTCCTCCTCGTCGTCATCAGGCACAGGCAAAGGTAGTAGAACCGGAAAAGCTAAAGCTTCTTCCAAGGTAAAGAATAATAATAATAATAATCATGACTCCCCAACAACAATAATGGAACAAGATTTCAATAGTGACTCATCATCAGAGAACAGCAATAATAACATTGGTGGTAGTTGTGATGATCGTCATAATAATAGTTCATTGTCTCCACAACCATCCTCTAGCGGTTTCTCTTGCATAACAACAGATACTGAAACCGCCGCTATAAACCATGAGGATAATAATTTAATTATTCTAGAGAATAATAATAATGATTACGGAGAGCTTGGTTTCTTTGATGCATATGATGAGCCAGTGAGTGAAGATTTCTGGACAGAACCATATCTGACTGACTTTTCCTATGTCCCACCCAGTAGTGAAGAATACTTTCTTAACCCTATTTGGGATATAGAATTCTGGGGCCAGAATAGCTTATACCTGGAATGA 855 0.414 MVRTPLCDKSGMRKGTWTAEEDKKLVAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWMNYLRPNIKRGNYTQEEEDTIITLHQNLGNRWSLIAANLPGRTDNEIKNHWHTVLKKRIQDKSSSSSSSSSSGTGKGSRTGKAKASSKVKNNNNNNHDSPTTIMEQDFNSDSSSENSNNNIGGSCDDRHNNSSLSPQPSSSGFSCITTDTETAAINHEDNNLIILENNNNDYGELGFFDAYDEPVSEDFWTEPYLTDFSYVPPSSEEYFLNPIWDIEFWGQNSLYLE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00830 284 CDD SANT 69 112 IPR001005 -
Aip08g00830 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip08g00830 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip08g00830 284 CDD SANT 16 61 IPR001005 -
Aip08g00830 284 Gene3D - 68 164 - -
Aip08g00830 284 SMART sant 66 114 IPR001005 -
Aip08g00830 284 SMART sant 13 63 IPR001005 -
Aip08g00830 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip08g00830 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip08g00830 284 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 207 - -
Aip08g00830 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 207 - -
Aip08g00830 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip08g00830 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip08g00830 284 Gene3D - 14 66 - -
Aip08g00830 284 MobiDBLite consensus disorder prediction 114 202 - -
Aip08g00830 284 MobiDBLite consensus disorder prediction 117 202 - -
Aip08g00830 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00830 Aip-Chr8 8855359 8856412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00830 1 159 MYB Transcription Factor Family AT1G06180 55.814 2.03e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00830 Myb_DNA-binding 8.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00830 K09422 - gmx:100778518 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00830 08 8855359 8856412 Aip08g00830 08 8855359 8856412 ECH
Aip08g00830 08 8855359 8856412 Aip03g01644 03 19405362 19406767 PCT