Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00829 ATGTCCATAAAGGAGGATGATGTTAAGAATGATTCTGATAATGATTTGGGTGATGATTTCGATTATCAACCGAATGTAGAAGATGATGCTGATGACAACGATGTGGATTCGCTGGATTCCACTAACAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCGGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACGGAGGATGAGGCTTGCCAATTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGAAATATGAGGTCTCTTGATATGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCAAACCAAGTGTCCAGCTCGGCTTAGGGTAAACCTTGACTACGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACTGGCCAATCGTCATCTAACTGTCACTGATAGAGTCCAAGTGAAAAATCTTCATAATTTTGGTGTCAAGAGCTGCCATATTATGGGGTATATTGCATTCCAAAAGGGTGGATATCGTCATGCTGGCTTCACACGAAAAGATTTGTACAACCACATCGATCGCTATCGTCGGGCAAAAGTTAAAAACGGGGATGCCAATGCGGCAATGAACTATTTGATTGGCAAGTCAAACAACGATCCGCTGTTCTTTGGAAAGTATACGTTCACTAGTGACGAAAGGCTGGAGCATATTTTTTGGGCAGATGGGCAGTCAATTATCGACTATCGCTGCTTTGGAGATATTGTTGCCTTTGATTCAACCTACAAGAAGAATAAATACAACAATCCTTTGGTCATTTTCTCTGGATGCAATCATCACGGGCAGACTGTTATCTTCGGCTCCAGCCTACTATCCGACGAAACCACAGAGACGTATAAGTGGTTGTTGGAAACCTTTGTTGAAGCGATGGGTGGGAAAAGTCCAAAAGCAGTAATAACTGACGGAGACCTTGCCATGCGAGATGCAATCAAGAATGTTCTGCCTGATGCGACCCATCGGTTATGTGGATGGCATCTGCAGAGAAATGCATGTGAAAATATAAAGAATTCTAATTTCCTGCGCGATTTTAAGGGTCTTATATACGACAACAACGACCAGAGAGACTTTGATCGGAGATGGGCAGCCATTTTGGATAAGCACAACCTTGTTGGTAGTACCTGGATGGAAAAGACGTACGAAACTCGTGAGATGTGGTCCCATTGTTTCCTCCGGGATAATTTTTTCGGTTACATAAGGACGACATCACAGTGTAAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATAGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCATTGGAGGTATATGAAAGATCTGCATCATGTTATTTCATGCGAAACATTTTCAAGGAAATTCGTAATGAGATTCAGAGGGTAGGGGCTTTGAATATAACGATACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCATGTGGTATTCCCTGTAGTCATATCTTATGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAAGGAAACTCAATGCCTAATGTTAACGTGGAAGGCATCAACGATCCATTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAAGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCACTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCTGAACACCACTCAGGACCTAATACCAATCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATAAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAGCCTCCATGAAAGCCGCGAATCCATTGACATCGCGTCCACGAATGGTGTTTTCAATAAAAATCTCTACTCGTTAACACAGCAGGTGAAGGAGTCACAGCAGGACAAAAGACATTCATTCACGAACTATGAATGCGTTAATGATGTCATTGATGATAAATGTGACACACGACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCGTCAATGCATAGGACACTTTGA 2700 0.4307 MSIKEDDVKNDSDNDLGDDFDYQPNVEDDADDNDVDSLDSTNKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRSLDMDDRSREARSLTQTKCPARLRVNLDYGCGRWKVSCFVESHNHDLTPPQFAHLVLANRHLTVTDRVQVKNLHNFGVKSCHIMGYIAFQKGGYRHAGFTRKDLYNHIDRYRRAKVKNGDANAAMNYLIGKSNNDPLFFGKYTFTSDERLEHIFWADGQSIIDYRCFGDIVAFDSTYKKNKYNNPLVIFSGCNHHGQTVIFGSSLLSDETTETYKWLLETFVEAMGGKSPKAVITDGDLAMRDAIKNVLPDATHRLCGWHLQRNACENIKNSNFLRDFKGLIYDNNDQRDFDRRWAAILDKHNLVGSTWMEKTYETREMWSHCFLRDNFFGYIRTTSQCKGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFMRNIFKEIRNEIQRVGALNITILSTTLDKVEFSVTALGDPAKDRRVEVDRGKNLFSCSCKLFESCGIPCSHILCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGNSMPNVNVEGINDPFVVKSKGAPSKKSSWRKKRACSNCHKYGHYYKHCPDLMQHSVEGNPRDRSYGNASAKDSGFSPERFANSSRSFSIKSEHHSGPNTNPFKKGGTRKFTATGIRNRKGKDNTFVERSLHESRESIDIASTNGVFNKNLYSLTQQVKESQQDKRHSFTNYECVNDVIDDKCDTRHVQIDVRDPLPSSLPCGNKQGSYMALFASMHRTL 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00829 899 ProSiteProfiles Zinc finger SWIM-type profile. 563 599 IPR007527 GO:0008270
Aip08g00829 899 SMART 26again6 574 601 IPR006564 GO:0008270
Aip08g00829 899 ProSiteProfiles Zinc finger CCHC-type profile. 715 730 IPR001878 GO:0003676|GO:0008270
Aip08g00829 899 MobiDBLite consensus disorder prediction 1 42 - -
Aip08g00829 899 SUPERFAMILY Retrovirus zinc finger-like domains 701 733 IPR036875 GO:0003676|GO:0008270
Aip08g00829 899 MobiDBLite consensus disorder prediction 12 35 - -
Aip08g00829 899 Pfam MULE transposase domain 286 380 IPR018289 -
Aip08g00829 899 PANTHER OS02G0262500 PROTEIN 60 713 - -
Aip08g00829 899 MobiDBLite consensus disorder prediction 756 786 - -
Aip08g00829 899 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Aip08g00829 899 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 713 IPR031052 GO:0006355
Aip08g00829 899 MobiDBLite consensus disorder prediction 739 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00829 Aip-Chr8 8829887 8832887 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g00829 MULE 1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00829 - - ahf:112755379 1668.67