Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00821 ATGGGGCTTGTGCAGCACAATCGCACGTTTGGGAGAGGTTGGGCGGCATCAACTGAAGGATGGGCAGCTGTGACTGGAGTCTGGGCGATAGTGGGCTATGGGGGAAGCTGCACGGCCGTGATGAGTGGGCAGCGCGAAAGAGATTGTACGGGGTTTGTACGGTGCGATCGGACGTTCGCGGAGAAGTTAGGCGGCAGTTGGAGTCTGAGTGATACCAAGAGAGAGAAAGAAAGGAAACCATTAACCATATATCCCGGCCACACACACACATACAGTTACAAACAGATAGAGGAAGAGACCAAAACCATACCAAAGACGAAAACCATGAAGAGCTGCGAGTTGTGCAAGGTTCCGGCCAGGACCTTCTGCGAGTCCGACCAGGCCAGTCTCTGTTGGGACTGCGACGCCAACGTTCACGGTGCTAACTTCCTCGTCGCCAGGCACACAAGAACCCTCCTCTGTCACGCCTGCCAGTCACCCACGCCCTGGAAGGCTTCCGGCGACAGGTTAGGCAACACCGTCTCGCTTTGTGAGATGTGCGCCGGCGGCAACAAGGTCTCCGCGGAGGAGAGCGAAGGAGGCAATGACGACGACATAGACACCGAGGACGACGATCTTGAAGACGAAGAAGAGGAAGAGGATGATGACGATGACGAGGTTCCCGCCGACGACGAGGAGGAAGAAGACGGGGACAACCAGGTGGTGCCTTGGTCCTCTACGGCGCCGCCCCCGCCGGCTCCGAGCTCATCCAGCAGCGAAGAGTCGGTCAGCCGCCGGTGCAACCACGCCGACGAAGAGGATTTTTCTGAGGCAGTTCCCTTAAAACGGCATCGTCACGATGTGGATCATGATGATTTTCTGGAGGGTTCGAAAGCTTGGAGATATAAACGGAGATACGGGGGGGAGTGGAGAAAGGAGGTTGGTTGGTTAGGATACGGCGGCGGAGCACGGCGTTGA 957 0.5716 MGLVQHNRTFGRGWAASTEGWAAVTGVWAIVGYGGSCTAVMSGQRERDCTGFVRCDRTFAEKLGGSWSLSDTKREKERKPLTIYPGHTHTYSYKQIEEETKTIPKTKTMKSCELCKVPARTFCESDQASLCWDCDANVHGANFLVARHTRTLLCHACQSPTPWKASGDRLGNTVSLCEMCAGGNKVSAEESEGGNDDDIDTEDDDLEDEEEEEDDDDDEVPADDEEEEDGDNQVVPWSSTAPPPPAPSSSSSEESVSRRCNHADEEDFSEAVPLKRHRHDVDHDDFLEGSKAWRYKRRYGGEWRKEVGWLGYGGGARR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00821 318 ProSiteProfiles Zinc finger B-box type profile. 107 153 IPR000315 GO:0008270
Aip08g00821 318 PANTHER - 109 290 - -
Aip08g00821 318 MobiDBLite consensus disorder prediction 193 232 - -
Aip08g00821 318 MobiDBLite consensus disorder prediction 186 276 - -
Aip08g00821 318 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 109 290 - -
Aip08g00821 318 CDD Bbox1_BBX-like 112 153 - -
Aip08g00821 318 Pfam B-box zinc finger 109 151 IPR000315 GO:0008270
Aip08g00821 318 SMART bboxneu5 107 153 IPR000315 GO:0008270
Aip08g00821 318 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00821 Aip-Chr8 8544741 8546719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00821 110 246 C2C2-CO-like Transcription Factor Family AT4G27310 46.626 2.85e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip08g00821 zf-B_box 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00821 - - gmx:100801024 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00821 08 8544741 8546719 Aip08g00821 08 8544741 8546719 ECH
Aip08g00821 08 8544741 8546719 Aip03g01636 03 19253541 19254783 PCT