Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00790 ATGGACATAGATTCTTCAGGAGGCACATCCAATTGGCTCTACGATTATGGCTTTGATAACATCTCTGTTGCTGACTTCATGGCTCCAGACTCTGCTGCTTTCACCTGGCTGCCTCAACCTCAGCCACACACCAATTTCAAGCCTCCTTCTTCCAATATCAGCTTGGAAATGGAATACTCAGTGGATTCAATTGTGCTGGAAGGTGGCCCTTCAAAGCGGTTGAGGACTGAATCATGTGCATCTGGAACCAAGGCATGTCGAGAGAAATTGCGAAGGGACAAACTGAATGAGAGGCATGCTATTATTTTAAATTTGTTTCTGGAACTGAGTTCCATCTTGGAGCCTGGTAGCATGCAGCCCAAAACCGACAAGGTTGCCATATTAAGTGATGCCGTCCGAGTCGTAAACCAATTAAGAGATGAAGCAGAGAAGCTGAAGGAAATGAATGATGAAATGCTTGAAAAAATTAAAGAGCTCAAGGCTGAGAAGAATGAGCTTCGGGATGAGAAAAATAGGCTCAAGGTAGAGAGAGAGAAGTTGGAGCAGCAATTCAAGATGACAAATGTTCAGCCAAGCTTCCTCCATCATGCTCCGGCCGCCACGAAAGCACAAGGTGCTAGCCAAAAGCTGATACCCTTCATAGGTTACCCTGGCATAGCCATGTGGCAGTTTATGCCCCCAGCTGCAGTTGATACATCAAAGGATCATCTCCTTCGTCCACCAGTGGCATAA 732 0.4604 MDIDSSGGTSNWLYDYGFDNISVADFMAPDSAAFTWLPQPQPHTNFKPPSSNISLEMEYSVDSIVLEGGPSKRLRTESCASGTKACREKLRRDKLNERHAIILNLFLELSSILEPGSMQPKTDKVAILSDAVRVVNQLRDEAEKLKEMNDEMLEKIKELKAEKNELRDEKNRLKVEREKLEQQFKMTNVQPSFLHHAPAATKAQGASQKLIPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00790 243 Pfam Helix-loop-helix DNA-binding domain 83 138 IPR011598 GO:0046983
Aip08g00790 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 138 IPR011598 GO:0046983
Aip08g00790 243 PANTHER BHLH TRANSCRIPTION FACTOR 1 243 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aip08g00790 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 152 IPR036638 GO:0046983
Aip08g00790 243 Coils Coil 128 190 - -
Aip08g00790 243 Gene3D - 81 167 IPR036638 GO:0046983
Aip08g00790 243 CDD bHLH_AtILR3_like 84 167 - -
Aip08g00790 243 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 243 - -
Aip08g00790 243 SMART finulus 85 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00790 Aip-Chr8 8016699 8018343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00790 64 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 58.919 3.05e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00790 HLH 7.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00790 - - aip:107613798 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00790 08 8016699 8018343 Aip08g00790 08 8016699 8018343 ECH