Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00776 ATGGAGGAACCCATTTGTCCAATCGATTCCAGTTGCCAAACTCAAATCTCTGCTCTTCTCTCTCCTCCCTCCACTCTTCAACTTCAGGAATATTATAATACCCTTTTGTCTGCAAGGCACTACAGTTCCATCACTGTCAAACAAGATGCTAACTTTGGCAAAGGGGTATTTGCTGCCATGGACTTCTCTGATGGGGACCTTGTTCTCAGGGACCAAATGCTTGTGGGGTCTCAACACTCATTCAACAAGATTGATTGTTTTGTATGTAGCTTCTGCTTTCGTTTTATTGGTTCCATAGAGCTTCAAATTGGAAGGAGGCTTTACCTGCAGGGATTAAGGGATTCTGAGAGTCATGGATGTGATGTCGGAAGCTCTTCGAGCTTGTCAAAAAACTTCCATGAGATGGATTCATCATCTGAAGATGAGGATCAGGGAACTCATCAATGTGGTTCCGGCAGTTCCAAAGATAAAAATCCTCTTCCTGAAGGTGTTGTGGAATCTTTAATGAATGGCCAACTGAATTTGCCTTTCTCTAAGGAGTTCTCGTTGCCATCGGCGGTTCCATGCCTGGGCGGCTGTGGAGAAGCTTACTATTGCAGCACATCATGTGCAGAGGCTGACTGGGAATCTTCGCATTCTTTACTCTGCACTGGCGAGAGGTCTGATCCCGCTCATAGGGAGGCACTTCTTAAATTCAATAAACATGCTAATGAAACAAATGATATATTCATCCTTGCCGCAAAGGCTATTTGTTTTACCATATTAAGATACCGCAAGTTAAAAGCAAACTGTCATGAAGGGAAAATGAAATATGATACTTCTGGTGATTCAAACAGCTATAATGCCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGATTGTGTTGCATTGCCAGATGATATTGATTCTTCAGATGAAGATTCGTTCAGGATGCAAATAAAAGAATTGGCATTCAAGTCTCTCCAACTTCTTAAGAAAGCTATATTTGACAAAGAGTGTGAGCCATTATTCTCCCTTGATATCTATGGACACATCATTGGCATGTTCGAACAGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATACATTGATGATCTGAAAAATCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTTTAGATGCTCTTGGTGAAGACTATTCTGTTTGTTGCCAAGGAACTGCTTTTTTTCCTTTGCAAAGCTGCATGAACCATTCCTGTAGTCCTAATGCCAAAGCCTTCAAGAGAGACGAGGATAGGGATGGCCAAGCAACCATAATCGCAGTAAGGCCGATTCGAAAAGGAGAAGAGATAACTATCTCATATGTTGATGAAGACCTTCCTTTTGAAGAGAGACAAGCATCCCTTGCAGACTATGGTTTTAGATGCAGGTGTCCAAAATGCATTGAAGAAGAGCCATAA 1473 0.4168 MEEPICPIDSSCQTQISALLSPPSTLQLQEYYNTLLSARHYSSITVKQDANFGKGVFAAMDFSDGDLVLRDQMLVGSQHSFNKIDCFVCSFCFRFIGSIELQIGRRLYLQGLRDSESHGCDVGSSSSLSKNFHEMDSSSEDEDQGTHQCGSGSSKDKNPLPEGVVESLMNGQLNLPFSKEFSLPSAVPCLGGCGEAYYCSTSCAEADWESSHSLLCTGERSDPAHREALLKFNKHANETNDIFILAAKAICFTILRYRKLKANCHEGKMKYDTSGDSNSYNASLLLEAWRPISMGHKRRWWDCVALPDDIDSSDEDSFRMQIKELAFKSLQLLKKAIFDKECEPLFSLDIYGHIIGMFEQNNLDLVVASPVEDYFLYIDDLKNPDKEEAEKITQPILDALGEDYSVCCQGTAFFPLQSCMNHSCSPNAKAFKRDEDRDGQATIIAVRPIRKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00776 490 ProSiteProfiles SET domain profile. 42 460 IPR001214 GO:0005515
Aip08g00776 490 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 489 IPR044237 GO:0008168
Aip08g00776 490 CDD SET_SMYD 408 485 - -
Aip08g00776 490 Pfam SET domain 54 459 IPR001214 GO:0005515
Aip08g00776 490 SUPERFAMILY HIT/MYND zinc finger-like 191 217 - -
Aip08g00776 490 SUPERFAMILY SET domain 32 485 IPR046341 -
Aip08g00776 490 MobiDBLite consensus disorder prediction 119 133 - -
Aip08g00776 490 SMART set_7 42 466 IPR001214 GO:0005515
Aip08g00776 490 MobiDBLite consensus disorder prediction 118 161 - -
Aip08g00776 490 Pfam MYND finger 188 216 IPR002893 -
Aip08g00776 490 Gene3D SET domain 382 489 IPR046341 -
Aip08g00776 490 Gene3D - 134 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00776 Aip-Chr8 7909138 7913259 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip08g00776 SET 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00776 - - aip:107613919 1010.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00776 08 7909138 7913259 Aip08g00776 08 7909138 7913259 ECH