Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00764 ATGCCAGCCGGTATTATGATTCCGGCGAGAAACATGATGTCATCGATGATCGGAAGGACCAACAATGGAAACAGCCTTGGGGGTGGGTTTGGATCTTCGTCTTCCTCTGGACTCTCTCTTGGCCAGATTGAGAACCACAACAAGGGTTCAGAGACACATCACCAAAGATCCATGGATATGTTTCAAGCCAACATGATGGAAGGTGGTCAATTGCACCACCACGGCCTCGAGATGGGTCAGAACACGCCGGAGAGCGACGTTCCTAGAATCCGAGAGGACGAGTTCGACAGCGCCACCAAGTCCGGCAGCGAGAACCAAGAAGGTGGCGCCTCCGGCGAGGACCAAGACCCCCGCCCTAACAAGAAGAAGCGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCATTCTTTAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCCGTGAGTTAGGGTTAGAGCCATTGCAAGTGAAGTTTTGGTTCCAGAACAAGCGCACTCAAATGAAGACGCAACATGAGAGGCACGAGAACACGCAGTTAAGGACAGAGAACGAGAAGCTGAGAGCGGATAACATGAGGTATAGGGAGGCTCTTAGCAATGCCTCTTGCCCCAACTGTGGTGGACCAACCGCCATTGGAGAAATGTCTTTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTAAGGGAAGAGATTGATCGGATTTCTGCCATTGCTGCAAAGTACGTGGGGAAGCCAGTGGTGAACTACCCACTCCTTTCGTCATCCTCAGTTCCAGCACGTCCGCTAGAACTCGGCATTGGTGGTTTCGGTGGGCAAGCGGGCATGGGTGGCGGCGACATGTACGGAGGAGGTGGAGCCGGAGATCTTCTGAGGCCAATAAGTGGGCCCACTGAAGCAGACAAGCCAATGATAATAGAGCTGGCCGTAGCGGCCATGGAGGAGCTGATTGGAATGGCACAGATGGGTGAGCCTCTTTGGTTGACCACACTTGATGGTGCCACCACTGTGCTTAACGAGGATGAATATGTTAGATCTTTCCCCCGTGGAATCGGACCCAAACCTAATGGATTCAAATGTGAGGCTTCACGAGAAACCGCTGTTGTCATCATGAACCATGTGAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCGACAGTTTTCTCTGGAATAGTTTCAAGAGCGGTGACTCTAGAAGTTCTATCAACAGGGGTAGCAGGAAACTATAACGGTGCCTTGCAAGTGATGACGGCGGAGTTACAAGTGCCTTCGCCGCTGGTGCCAACAAGAGAGAGCTATTTCGTAAGGTATTGTAAGCAGCACGCGGACGGCACGTGGGCAGTGGTGGACGTGTCGTTGGACAATTTGCGGCCTAGTCCTTCGGCCAGGTGCAGGAGAAGGCCTTCTGGTTGCTTGATTCAAGAAATGCCCAACGGCTATTCCAAGGTCATATGGGTTGAGCACGTTGAAGTTGATGACAGAGGCGTTCATAGTCTCTATAAGCAGCTTGTTAGCTCTGGTCACGCCTTCGGTGCCAAACGCTGGATTGCAACCTTGGATCGCCAGTGTGAAAGGCTCGCTAGTGCCATGGCCACTAACATTCCCACCGTTGATGTTGGAGTGATAACAAACCAAGAAGGGAGGAAGAGCATGCTGAAACTGGCGGAGAGAATGGTGATAAGCTTTTGTGCTGGGGTGAGTGCTTCAACGGCGCACACGTGGACAACGCTTTCTGGAACGGGTGCGGATGACGTCAGAGTCATGACACGTAAGAGTGTGGATGACCCTGGAAGGCCACCTGGCATTGTTCTCAGTGCTGCTACTTCTTTCTGGCTCCCAGTCCCTCCTAAAAGGGTCTTTGAATTCCTCCGTGACGAGAATTCCAGAAGCGAGTGGGACATCCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTCTCTCTCCTTCGAGTCAATGTATGTTACAGTAACATGTTGATATTGCAAGAGAGTTGCACGGATTCAACTGGGTCATTTGTGATCTATGCCCCAGTGGACATTGTTGCCATGAATGTGGTTCTGAATGGAGGAGATCCTGACTATGTGGCGCTTCTTCCTTCTGGCTTCGCTATTCTTCCGGACGGGACAACGCCCGACGGAGGTAGCGAAGCCGGTGGACATGGTGGTTCTCTCTTAACCGTTGCGTTTCAAATACTGGTTGATTCCGTTCCAACCGCCAAGCTGTCTCTTGGTTCTGTTGCCACTGTTAACAACCTTATTGCTTGCACTGTTGAGAGAATTAAGGCTTCTTTATCTGGAGAAGCTCCTTCATAA 2379 0.5095 MPAGIMIPARNMMSSMIGRTNNGNSLGGGFGSSSSSGLSLGQIENHNKGSETHHQRSMDMFQANMMEGGQLHHHGLEMGQNTPESDVPRIREDEFDSATKSGSENQEGGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSSSVPARPLELGIGGFGGQAGMGGGDMYGGGGAGDLLRPISGPTEADKPMIIELAVAAMEELIGMAQMGEPLWLTTLDGATTVLNEDEYVRSFPRGIGPKPNGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAVTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNVCYSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTPDGGSEAGGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEAPS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00764 792 MobiDBLite consensus disorder prediction 95 130 - -
Aip08g00764 792 Pfam START domain 317 536 IPR002913 GO:0008289
Aip08g00764 792 SUPERFAMILY Homeodomain-like 111 179 IPR009057 -
Aip08g00764 792 SMART START_1 316 536 IPR002913 GO:0008289
Aip08g00764 792 CDD homeodomain 122 180 IPR001356 GO:0003677
Aip08g00764 792 Gene3D - 361 533 IPR023393 -
Aip08g00764 792 CDD START_ArGLABRA2_like 311 535 - -
Aip08g00764 792 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 75 788 - -
Aip08g00764 792 SUPERFAMILY Bet v1-like 307 538 - -
Aip08g00764 792 Gene3D - 109 196 - -
Aip08g00764 792 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Aip08g00764 792 SMART HOX_1 120 183 IPR001356 GO:0003677
Aip08g00764 792 SUPERFAMILY Bet v1-like 555 783 - -
Aip08g00764 792 MobiDBLite consensus disorder prediction 18 46 - -
Aip08g00764 792 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Aip08g00764 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 75 788 IPR042160 -
Aip08g00764 792 Coils Coil 185 205 - -
Aip08g00764 792 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Aip08g00764 792 ProSiteProfiles START domain profile. 307 539 IPR002913 GO:0008289
Aip08g00764 792 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00764 Aip-Chr8 7778078 7782648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00764 60 789 Homeobox Transcription Factor Family AT1G05230 78.349 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip08g00764 START 3.2e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00764 K09338 - gmx:100809556 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00764 08 7778078 7782648 Aip08g00764 08 7778078 7782648 ECH
Aip08g00764 08 7778078 7782648 Aip03g01558 03 17423857 17432143 PCT