Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00761 ATGGAGGTGCACTTGCTTACAAGGCATGGCAGCATGGTGATGGTGTTGTTCCTCTTGGTTTTCTGCTCCTGGATTCCAATAGAAGTGATGGGGAGGACAGGAGCTACCATTGGAAACGCTACCGTTTCTTCTTTGAGTCCAAGAGTTTTGAAAATTGGGGTGCTGTTTACTTTGAATTCTGTCATTGGAAGATCAGCTAAAGCTGGTGTATTGGCTGCTATTGATGATGTTAATGCTAACAAAAGCATCCTTCGTTCGACTAAACTTGAAATTATGTTGCATGATACAAATTGCAGCGGGTTTCTTGGAACCGTGGAAGCTCTGCAGTTGATGGAGAATGAAGTGGTTGCTGCAATTGGTCCACAATCATCTGGAATAGCTCATGTCATCTCTCATGTGGCTAATGAACTCCATGTGCCTCTTCTTTCATTCGCGACAGATCCTGCTCTAGTGTCACTCCAGTATCCATATTTCATCCGCACCACACCAGATGACTATTTCCAGATGTATGCAATTGCAGACTTGGTTGATCACTATAGGTGGAGGGAGGTAATAGCTATCTTTGTAGATGATGACAATGGAAGAAATGGAATTTCAGTGTTGGGCGATGCGCTTGCTAAGAAACGTGCCAAGATATCTTACAAGGCTGCATTCCCTCCTGGAGCCCCCATGAGTAATATCAGTGACTTGTTGAATCAGGTGAACCTGATGGAATCACGTGTTTATGTGCTGCATGTTAATCCTGATTCTGGCTTGTCAATTTTTGCACTTGCCAAGAAGATTGGGATGATGACTAGTGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCTGTGCTGGATTCTATGGAGCAGGTTAACACTGACACCCTTAATATACTACAAGGAGTTGTTGCTCTGCGGCATCACACGCCTGACACTGATCTTAAGAAGAGTTTCATCTCAAATCTGAAGAGCAGAAAGAACAATGAGACTGCAGGCTTCAATTCTTATGCATTCTATGCATATGATTCTGTTTGGTTAGCGGCGCGTGCTCTGGATACTTTTCTCAATGAAGGTGGAAACATATCTTTCTCCTCGGATCCTAAGTTGCAAGACACAAATTCAAGCATGTTGCATTTTTCAGCACTCCGTGTGTTTGATGGCGGTGATAAGTTTCTTCAGACAATTCTGGAAACAAACTTCACTGGTGTGAGTGGCCCAGTTCAGTTTGGTATGGATAAGAATTTGATTCATCCAGCTTATGATATCATGAATATCGGCGGGTTTGGAACTCGTAGGATTGGTTATTGGTCTAATTATTCTGGTCTCTCAGTAACAGCTCCTGAAATTTTGTATCTGAAACCACCTAACGCTTCGGCAAGCAACCAACACCTATATAGTGTTATATGGCCTGGAGAAACAACAGTTACACCAAGGGGATGGGTATTCCCAAACAATGGGAAACCATTGAGAATCGCAGTGCCTAATCGAGTAAGCTATTTGGAGTTTGTTGGTAAGGACAAGAACCCTCCTGGGGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAAGTTGTTGCCTTATCCTGTCCCAACAGAATATATATTATATGGTCATGGTGATAGAAATCCCAGCTATGATGACCTTGCATATCAGGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATATTACAATTGTCACAAACAGGACAAGGATTGTGGATTTTACTCAGCCTTACATGGAATCAGGGCTGGTGGTTGTTGTTCCTGTTAAGGAAATCAAGTCAAGCCCTTGGTCCTTTCTAAAGCCATTCACCACTAAAATGTGGTTAGTTACCGGTGCATTCTTTCTCTTCGTGGGAGCCGTCGTGTGGATTCTCGAGCACCGGCACAATGAAGAATTCCGCGGTCCTCCAAGGAAACAAATTATAACAGTGTGTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCACTCGGTCGATTGGTTCTACTCATATGGCTTTGGGTGGTTTTAATCATCAATTCAAGCTACACAGCTAGCTTAACATCCATCCTTACAGTGCAGCAACTTTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGAATCCAAGAAGGATCTTTTGCGAAAAAGTATCTGACAGATGAACTCAACATAGCACCATCTAGGATAGTTACACTGAAAAATATGGAGGCATATGTTGATGCCCTTGAACGCGGACCAAGGAATGGAGGGGTTGTGGCCATTGTTGATGAGCTTCCTTATATTCAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACAGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAAAGGGATTCACCGCTTGCTGTTGATTTGTCAACTGCCATCCTTCAACTTTCGGAGAACGGGGAACTGCAAAAGATCCATGACAAATGGCTTTTGAAACGAGACTGCACTGCGCAACTCAACGTTGAAGACTCAAATAAACTGTCTCTGAGTAGCTTCTGGGGCCTCTTTCTCATATGTGGCGTTGCATGCTTCCTTTCTTTGGTTGTATTCTTTGTTAGAGTGTTCTGTCAATACACCAGATTTAGCCCTGAGCCTGAACAAGTTGATGTGGAAATTCAACCAAGGCCTCCTAGAAGGAACCTCAAAAGTACTAGTTTCAAGGACTTGATGGAATTTGTGGATACGAAAGAAAAAGAAATCAAAGAGAGACTTAGGAATAGTAAAAGGAGAAGAAGCCAGAGTCTAGATGAGCAATCTAGTTCATCACCCTCCTAA 2820 0.4277 MEVHLLTRHGSMVMVLFLLVFCSWIPIEVMGRTGATIGNATVSSLSPRVLKIGVLFTLNSVIGRSAKAGVLAAIDDVNANKSILRSTKLEIMLHDTNCSGFLGTVEALQLMENEVVAAIGPQSSGIAHVISHVANELHVPLLSFATDPALVSLQYPYFIRTTPDDYFQMYAIADLVDHYRWREVIAIFVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGAPMSNISDLLNQVNLMESRVYVLHVNPDSGLSIFALAKKIGMMTSGYVWIATDWLPSVLDSMEQVNTDTLNILQGVVALRHHTPDTDLKKSFISNLKSRKNNETAGFNSYAFYAYDSVWLAARALDTFLNEGGNISFSSDPKLQDTNSSMLHFSALRVFDGGDKFLQTILETNFTGVSGPVQFGMDKNLIHPAYDIMNIGGFGTRRIGYWSNYSGLSVTAPEILYLKPPNASASNQHLYSVIWPGETTVTPRGWVFPNNGKPLRIAVPNRVSYLEFVGKDKNPPGVKGYCIDVFEAAIKLLPYPVPTEYILYGHGDRNPSYDDLAYQVAQNNFDAVVGDITIVTNRTRIVDFTQPYMESGLVVVVPVKEIKSSPWSFLKPFTTKMWLVTGAFFLFVGAVVWILEHRHNEEFRGPPRKQIITVCWFSFSTMFFSHRENTVSALGRLVLLIWLWVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGIQEGSFAKKYLTDELNIAPSRIVTLKNMEAYVDALERGPRNGGVVAIVDELPYIQLFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQKIHDKWLLKRDCTAQLNVEDSNKLSLSSFWGLFLICGVACFLSLVVFFVRVFCQYTRFSPEPEQVDVEIQPRPPRRNLKSTSFKDLMEFVDTKEKEIKERLRNSKRRRSQSLDEQSSSSPS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00761 939 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Aip08g00761 939 Gene3D - 596 719 - -
Aip08g00761 939 PANTHER GLUTAMATE RECEPTOR 3.4 39 928 - -
Aip08g00761 939 MobiDBLite consensus disorder prediction 918 939 - -
Aip08g00761 939 SUPERFAMILY Periplasmic binding protein-like II 459 826 - -
Aip08g00761 939 SUPERFAMILY Periplasmic binding protein-like I 46 476 IPR028082 -
Aip08g00761 939 Gene3D - 72 412 - -
Aip08g00761 939 Gene3D - 479 595 - -
Aip08g00761 939 CDD PBP1_GABAb_receptor_plant 51 441 IPR044440 -
Aip08g00761 939 Pfam Receptor family ligand binding region 68 420 IPR001828 -
Aip08g00761 939 PIRSF IGluLR_plant 9 939 IPR017103 -
Aip08g00761 939 Gene3D - 720 828 - -
Aip08g00761 939 Gene3D - 164 437 - -
Aip08g00761 939 CDD GluR_Plant 482 825 - -
Aip08g00761 939 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Aip08g00761 939 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 928 - -
Aip08g00761 939 Pfam Bacterial extracellular solute-binding proteins, family 3 504 826 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00761 Aip-Chr8 7753017 7757838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00761 47 792 Ion Channels AT1G05200 68.675 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00761 K05387 - gmx:100799912 1414.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00761 08 7753017 7757838 Aip08g00761 08 7753017 7757838 ECH
Aip08g00761 08 7753017 7757838 Aip03g01550 03 17361493 17366144 PCT