Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00760 ATGAAGTCGTTTGTTGTTTCCCACCTTGTGATTTGGACCATCTTTTGTGGTGGTATTTTCTGCAGTAGGCCTGCAAGTGTGAACATTGGTGCAGTCTTCACCTTCGATTCGGTCATTGGTAGAGCTGCAAAGGTGGCCATGAAAATGGCCGTTGATGATGTCAATGCTGACCCTAGAATCCTCAATGGCACCCACCTCAACTTGATAATGAAGGATGCTGCCTGCAGTGTCTTTCTGGGAGCTATTGGAGCTTTTCAGGCACTCGAGGAAGGGATCGTAGCAATGGTTGGTCCACAGTCGTCTTCTATAGCTCATATGGTATCTCAAATTGCTGATGCTCTCCATGTGCCTCTTGTCTCATATGGTGCCACTGATCCTACCCTGTCCTCCCTTCAGTTCCCTTACTTTTTTCGTACTATACAAAGCGACTTGGAGCAGATGATTGCGGTAGCTGATCTAATTGAATTCAATGAATGGAAGGAGGTCATTGCTGTATACTTGGATGATGATTATGGAAGAAATGGAATGTCGGCTTTGAGGGATGAACTTGAAAATAGGAGATTGAAAATTGCTCATAAGCTACCTTTGAGTATTCAGTTTGATCCAAATGAAATCACCACTTTGCTGAACCAATCCAAATTGTTTGGTCCTCGTGTGTATGTTGTTCATATCAACCTGGATCCAAAACTGAGATTTTTCAACATTGCCAACAAACTTGAAATGATGACCAAAGACTATGTTTGGCTAGTCACTGATTGGCTCTTTGCTACCTTAGATTCTTTCTCCCCAGTGAATCAGACCTCTCTCAGTGTTCTCCAAGGGGTTGTTGGTTTTCGTCAGCATATTCCAGATTCCCGAAAGAAGAGAGGTTTCGTTTCTCAATGGAGAAATGCACATAAAGGTATACCAAATGGTAGTTTGAATGCCTATGGATATTATGCTTATGATACAATATGGGCAGTTGCGCGATCAATTGACAGATTCATCAGATTGCATAATAATATTACCTTTGTAGTTAATCATAAGAATAAGCCATCTCACACACAAGGAAATGATCTTCAACTTGACAAGCTCAAAATCCTTGCTAGTGGATCTGATCTGGGCAGTATATTATTACAGTCAAATTTTACTGGTGTGAGTGGTCGAGTTCAGTTTAATTCAAACAGGAATATCATAAGTGGTGGTTATGATGTTATAAATATCAATCAGAATGCAATGACTACGGTTGGTTATTGGTCTAATTGCTCAGGATTTTCGGTCATCCCCGCTGAAAATCTTAAAACTAAGAAATGTAAAAGGTTAACTCAAGGTCATAAGCTTGGCAATATTACTTGGCCTGGTGGAGGGACAGAAAGACCGCGCGGCTGGGTGATTGCTGATAATGGAAGACCACTGAGAATTGGAGTACCACGTAGAGCAAGTTTTGTTGAATTTGTGACTGTGAAGGATCATCAAATTCTGGGGTACTGCATTGATGTCTTCAACAAGACCCTGGAATTTATTCCATATGAAGTTCCTTACCGTTTCATGCCTGTTGGGAATGGTAAATCAAATCCGAGCTATGATGAACTCGTGAAAAATGTTGCTGACAGTGTATATGATGCAGTTGTCGGCGACATTGCAATTGTGACGAACCGTACACAATATGTGGATTTTTCTCAGCCTTATGCAACATCTGGCCTTGTTATAGTGGCTCCTGTCGACAATGCAAGATCAAATGCTTGGGTGTTTCTCCAACCATTCACAGCAGATATGTGGTGTGCTACGGCTGCTTCATTCGTGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAATGATGACTTCCGTGGTCCTCCTAAGAGACAACTGGTGACAGCGTTTATGTTCAGCCTCTCAACACTGTTTAAGACAAACCAGGAACGGACGATAAGCTCGCTATCCAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGTGATCACTGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTCTCATCGCCCATCACAGGAATCGATAGCTTGATTGCGAGCAATTGGCCCATAGGATACCAAGTAGGATCTTTTGCTTACAGCTATCTTACGGATAGTCTTTATATATCAAAATCAAGACTTGTTCAGCTAGGCTCTCCGGAGGAATATGCTAAAGCTCTGAAGAAGGGGCCGTCTAATGGAGGGGTGGCGGCTATCATCGATGAGCTTCCTTACGTGGAGTTATTTCTGTCAAAAGAAACCGGGTTTGGTATCATTGGACAGCCATTTACCAAAAGCAGTTGGGGATTTGCTTTCCAAAAAGAGTCTCCTCTCGCCCTCGACATGTCCACGGCTATTCTAAAACTCGCCGAGAGCGGAGAGCTCCAGAAGATACATGACAAGTGGCTCTGTAAGATGGGTTGCTCTGAAAAAACAACAAGCAACTCCAAGCCTGACCAACTTCACTTGATTAGTTTTTGGGGTCTGTATCTGTCATGTGGTGTTGTCACTCTCGCCTCGCTTTTGGTGTTTCTTCTGCGAGCGATTCGCCAATACGCTCGCTTCAAACGACGGGAAAAGGACATTGCTGTCGCCTCATCGTCGGAACCATCAAAGACCAGCAGCCATTGTTCCCAGGTTCTCCTTAACTTCTTCAACTTCATTGATGAAAAAGAAGAGGCCATAAAGAAAATATTCACTCAATGTGACAATCCTGAACCTCAAGTCAGATAA 2733 0.4296 MKSFVVSHLVIWTIFCGGIFCSRPASVNIGAVFTFDSVIGRAAKVAMKMAVDDVNADPRILNGTHLNLIMKDAACSVFLGAIGAFQALEEGIVAMVGPQSSSIAHMVSQIADALHVPLVSYGATDPTLSSLQFPYFFRTIQSDLEQMIAVADLIEFNEWKEVIAVYLDDDYGRNGMSALRDELENRRLKIAHKLPLSIQFDPNEITTLLNQSKLFGPRVYVVHINLDPKLRFFNIANKLEMMTKDYVWLVTDWLFATLDSFSPVNQTSLSVLQGVVGFRQHIPDSRKKRGFVSQWRNAHKGIPNGSLNAYGYYAYDTIWAVARSIDRFIRLHNNITFVVNHKNKPSHTQGNDLQLDKLKILASGSDLGSILLQSNFTGVSGRVQFNSNRNIISGGYDVININQNAMTTVGYWSNCSGFSVIPAENLKTKKCKRLTQGHKLGNITWPGGGTERPRGWVIADNGRPLRIGVPRRASFVEFVTVKDHQILGYCIDVFNKTLEFIPYEVPYRFMPVGNGKSNPSYDELVKNVADSVYDAVVGDIAIVTNRTQYVDFSQPYATSGLVIVAPVDNARSNAWVFLQPFTADMWCATAASFVMIGVVIWILEHRVNDDFRGPPKRQLVTAFMFSLSTLFKTNQERTISSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDSLYISKSRLVQLGSPEEYAKALKKGPSNGGVAAIIDELPYVELFLSKETGFGIIGQPFTKSSWGFAFQKESPLALDMSTAILKLAESGELQKIHDKWLCKMGCSEKTTSNSKPDQLHLISFWGLYLSCGVVTLASLLVFLLRAIRQYARFKRREKDIAVASSSEPSKTSSHCSQVLLNFFNFIDEKEEAIKKIFTQCDNPEPQVR 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00760 910 Gene3D - 457 574 - -
Aip08g00760 910 CDD GluR_Plant 463 803 - -
Aip08g00760 910 Pfam Ligand-gated ion channel 804 835 IPR001320 GO:0015276|GO:0016020
Aip08g00760 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Aip08g00760 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Aip08g00760 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 314 326 - -
Aip08g00760 910 SMART GluR_14 466 805 IPR001320 GO:0015276|GO:0016020
Aip08g00760 910 Gene3D - 45 393 - -
Aip08g00760 910 PANTHER GLUTAMATE RECEPTOR 3.7 13 908 - -
Aip08g00760 910 Gene3D - 575 706 - -
Aip08g00760 910 Pfam Receptor family ligand binding region 44 403 IPR001828 -
Aip08g00760 910 Pfam Bacterial extracellular solute-binding proteins, family 3 483 803 IPR001638 -
Aip08g00760 910 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Aip08g00760 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 908 - -
Aip08g00760 910 SUPERFAMILY Periplasmic binding protein-like II 443 803 - -
Aip08g00760 910 PIRSF IGluLR_plant 1 908 IPR017103 -
Aip08g00760 910 SUPERFAMILY Periplasmic binding protein-like I 21 457 IPR028082 -
Aip08g00760 910 Gene3D - 142 417 - -
Aip08g00760 910 Gene3D - 758 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00760 Aip-Chr8 7742152 7746806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00760 21 904 Ion Channels AT2G32400 56.194 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00760 K05387 - gmx:100796389 1368.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00760 08 7742152 7746806 Aip08g00760 08 7742152 7746806 ECH
Aip03g01550 03 17361493 17366144 Aip08g00760 08 7742152 7746806 PCT