Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00746 ATGACTTCCAAGAATAACAAGAATAATGAGGATGGTGAGTCTTGGAGAGATGATTTGAGAAAGGGGCCTTGGACGCCGAGAGAGGACGCCATGCTTATCGAGCTCGTAGAGAAGTACCGAGAACGTAATTGGAGTTTATTAGTTCAAAAGAATTCTGAGTTGAGGAGAAGTGGCCAAAGTTGTAGGCATAGATGGCTCGAACATTTAAAGCCTGGCTTGAAGAAGGGTCCTCTCTCTGAAGAAGAGGAGAAACTCATCGTTGATCTTCATTCTCAGTTTGGAAACAGATGGGCTCTAATAGCTACCAAGGTTCCTGGAAGATCAGGCAATGAAATCAAGTGTTTTTGGAATACAAGAATGAAGAAGCGCCCAAGAGAATGGTTACCAGAAGATCCTCCACAAATGCTTCAACAAGCACAACACTTTTCTTCATCAGCTTCATCATCGTCATTTAATTCGGTCTTAGCTTCATGTTATCCTAAAAATGATCTTAGTAGTGTTGAACTGCCGCCAAATATTTCTGCTGCAAATCCTCCACAAAATCATAATCAAAAATAA 558 0.4104 MTSKNNKNNEDGESWRDDLRKGPWTPREDAMLIELVEKYRERNWSLLVQKNSELRRSGQSCRHRWLEHLKPGLKKGPLSEEEEKLIVDLHSQFGNRWALIATKVPGRSGNEIKCFWNTRMKKRPREWLPEDPPQMLQQAQHFSSSASSSSFNSVLASCYPKNDLSSVELPPNISAANPPQNHNQK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00746 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Aip08g00746 185 MobiDBLite consensus disorder prediction 9 24 - -
Aip08g00746 185 Gene3D - 77 145 - -
Aip08g00746 185 MobiDBLite consensus disorder prediction 1 24 - -
Aip08g00746 185 Pfam Myb-like DNA-binding domain 24 84 - -
Aip08g00746 185 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 170 - -
Aip08g00746 185 CDD SANT 23 69 IPR001005 -
Aip08g00746 185 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Aip08g00746 185 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 170 - -
Aip08g00746 185 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Aip08g00746 185 Gene3D - 21 74 - -
Aip08g00746 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 73 IPR017930 -
Aip08g00746 185 SMART sant 74 122 IPR001005 -
Aip08g00746 185 SMART sant 20 71 IPR001005 -
Aip08g00746 185 ProSiteProfiles Myb-like domain profile. 16 69 IPR001005 -
Aip08g00746 185 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00746 Aip-Chr8 7430379 7432516 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00746 19 139 MYB Transcription Factor Family AT2G32460 55.372 1.66e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00746 Myb_DNA-bind_6 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00746 K09422 - ahf:112771967 251.521