Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00741 ATGACCTTCCGCCCCTCCAAAATACTGCGCCAACCCCACCAAGATGTCTTACTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCCCATTGAGAAGCCGTTCAAGGAGCGTCTCAAGTGATGCAGAAAATTCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACTAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGATGCGCTCTTCCTAAGCTTGTGACATATGCATCTGATCAAACATACTCTTCTCTACTAAAAGTCTGCCAGATAGGTGGACTTAATCCTGAGCTTTGTAGGTCACTAAAAACTGATGCTTCAACAAATTATGCGCTTTCTCCTGAAGTATTTTCTGAAGCAGTTTCAAGAGACATTGCTAGTGGTCTTATACCATTTTTCTTATGTGCTACTGTTGGTACAACTTCATCAACTGTTCCAGGTGCTACTACTTTGGCTGAAAAGCTGAACCACCAAGGTATTGATGTGGTATCTTTGTCACAAATTAAAGAAGGTTTCAGTTTCAAAGACACGCGTAATCATTGTATCTGCTGTAAGGGAGATGCTTGGTGCTGGCATTTGTTTGTTTTTGTTGGTAACTCATTCTAA 711 0.4163 MTFRPSKILRQPHQDVLLKEIKVFSFSFPLRSRSRSVSSDAENSGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCALPKLVTYASDQTYSSLLKVCQIGGLNPELCRSLKTDASTNYALSPEVFSEAVSRDIASGLIPFFLCATVGTTSSTVPGATTLAEKLNHQGIDVVSLSQIKEGFSFKDTRNHCICCKGDAWCWHLFVFVGNSF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00741 236 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 102 IPR000504 GO:0003723
Aip08g00741 236 SUPERFAMILY RNA-binding domain, RBD 32 103 IPR035979 GO:0003676
Aip08g00741 236 Gene3D - 37 96 IPR012677 -
Aip08g00741 236 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 27 103 - -
Aip08g00741 236 Pfam Pyridoxal-dependent decarboxylase conserved domain 101 178 IPR002129 GO:0016830|GO:0019752|GO:0030170
Aip08g00741 236 PANTHER TRANSFORMER-2-RELATED 27 103 - -
Aip08g00741 236 SMART rrm1_1 47 124 IPR000504 GO:0003723
Aip08g00741 236 Gene3D - 99 177 IPR015421 GO:0003824
Aip08g00741 236 SUPERFAMILY PLP-dependent transferases 104 178 IPR015424 -
Aip08g00741 236 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00741 Aip-Chr8 7300132 7302868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00741 36 115 Eukaryotic Initiation Factors Gene Family AT3G11400 39.024 7.86e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00741 - - aip:107613061 151.369