Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00732 ATGGTGCTTCATCCTCGTCCACGCCGTTCCAATGGGAACGACCAGCAGCCTGTAGCTGAAGCTGATGGCCGAGGCACCAGTGTTAACTATGCAGATATTCACACCATATCTTCTGATTCTGATTCTGATTCTGATTCTGATTCTATTGTATATTCAAATTCTAGTTACGAAGGATTGCTAGATAACTTCAATCAAGAACCAGGGTCAAGTAGTAGCAGTTGTGACACTTCTGATTATTATGAGCATGGAAAAAGGCAAAAGCCAAAGTTCAGTAATGCAAGAAGTTCTGACGTGAAAAATAGAGGACCAAATGATGTTGATAGAGTGGTGGACAATGCAAAGCTGCTATGGCAAGTATGGGAAAATAACCAAGAAAGATGGATTGATGAGAATTTATCGGAAGATGCTGACTTAGATAATCAGAATGAAGTATTGACAGAAACTGCTGAGGCATCTTCTGATCTGACTATGCCTTTACTTAGGTACCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGATACTAGAGGTGGCATCCTTGCAGATGAAATGGGAATGGGAAAGACTATTCAAGCAATAGCACTTGTCCTTGCCAAACGTGAATTGATGCAAAGTAGTTCTGCACCAGCTGAACCCATACTATCGCATTCACCTTCTTTATCTGGAATCTTGCCTGCGGTCAAAGGAACACTTGTCATTTGTCCTGTTGTCGCTGTTACTCAGTGGGTTAATGAGATTGATCGGTTTACCATCGAAGGAAGCACCAAGGTGCTCGTTTATCATGGGGCAGGGAGAGGGAAGAGTATTGAACAGTTCTTGGATTATGATTTTGTGATAACTACGTACTCTACTGTTGAGTCTGAGTACAGGAAGTTTATGATGCCTCCTAAGGAAAAACAATCAAGGCAAGTTAAGAAGAAAACAGAAGTCACTAGAGGGATGGACAAAGAAGGTGTGAGTAAGATGTCTTGTAGTGAAAAGAAACTGAGCATGGACGCAGAAGATGCAAATGCTACACACAGGGGTATGTCACTTCTTCATGCTGTTAAATGGCTGCGGATTATATTGGACGAGGCTCACTACATAAAGTCCAGACATAGTAACACAGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGGCTTTAAGTGGCACTCCCATTCAGAACCGTGTTGGAGAGCTGTACTCTCTTGTACGGTTCCTGCAAATAACTCCGTATTCATTTTACTTGTGCAAGGACTGTGATTGCAGGACCCTTGATCACAGCTCCATACAATGTCCAGACTGCAGCCACAGTTCAGTTAGACATTTCTCTTGGTGGAATAAATATGTTTCCACACCAATTCAATCCTCTCTAAGTAGCTATGGGCGGGGTAAAAGAGCTATGATCTTGCTTAAACACAAAGTTCTGAAGAACATACTACTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTTCCTCCTAGAATTGTCTCACTGAGAAGGGATTGTCTGGATATAAAAGAGCAAGACTATTATGAGTCATTATACAATGAAAGTCAGGCACAATTTAATACGTATGTCGAATCTAATACACTGATGAATAATTATGCTCATATATTTGATCTTCTCACACGGCTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAGCTGCGGCACGACAAGGTGGCCATGTGGCTAGTAATGCTACTGCTGAACAAGCATGTGGCCTTTGTCGTGAACCAGTGGAAGATCCTGTGGTTACCTCTTGTGAGCATAGATTTTGCAAGACATGCTTTATAGATTTCTCTACTGCTTTGGGACAAGTATCATGCCCTTCATGCTCTCAATTACCTACTGTTGATTTAACTTCCCACAAGGATGTTGGGTACCAGGCAAATAAAACCACTATTAAGGGATCCAGATCCTCAAGCATTTTAGACAGAATTCAGCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCTTTGCGAGAAGAAATAAGATCTATGGTCGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTAATAAACTTCTCTTTGAATAAGTCTGGGGTATCTTGTGTTCAATTGAATGGAAATATGACAATGAGTGCCCGAGATGCTGCCATTAAGAGGTTTACCAATGATCCAGACTGCAGGATTTTTCTCACGAGCCTGAAGGCCGGAGGCGTTGCACTCAATTTGACTGTAGCATCACATGTTTTCCTTATGGATCCTTGGTGGAACCCAGCTGCGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGACAATTTAAACCTATAAGAATTGTGAGATTTATAATTGAGAACACTGTTGAGGAGAGGATTTTGAATCTGCAACAGAAGAAGGAACTAGTGTTTGAAGGGATTATAGGTGGCTCTTCTGATGCTCTGGGAAAACTGACGGAGGGAGACTTGAAATTTCTATTTGGTACATAG 2505 0.418 MVLHPRPRRSNGNDQQPVAEADGRGTSVNYADIHTISSDSDSDSDSDSIVYSNSSYEGLLDNFNQEPGSSSSSCDTSDYYEHGKRQKPKFSNARSSDVKNRGPNDVDRVVDNAKLLWQVWENNQERWIDENLSEDADLDNQNEVLTETAEASSDLTMPLLRYQKEWLAWALKQENSDTRGGILADEMGMGKTIQAIALVLAKRELMQSSSAPAEPILSHSPSLSGILPAVKGTLVICPVVAVTQWVNEIDRFTIEGSTKVLVYHGAGRGKSIEQFLDYDFVITTYSTVESEYRKFMMPPKEKQSRQVKKKTEVTRGMDKEGVSKMSCSEKKLSMDAEDANATHRGMSLLHAVKWLRIILDEAHYIKSRHSNTAKAVLALESSYKWALSGTPIQNRVGELYSLVRFLQITPYSFYLCKDCDCRTLDHSSIQCPDCSHSSVRHFSWWNKYVSTPIQSSLSSYGRGKRAMILLKHKVLKNILLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYVESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQAAARQGGHVASNATAEQACGLCREPVEDPVVTSCEHRFCKTCFIDFSTALGQVSCPSCSQLPTVDLTSHKDVGYQANKTTIKGSRSSSILDRIQLENFQTSTKIEALREEIRSMVERDGSAKGIVFSQFTSFLDLINFSLNKSGVSCVQLNGNMTMSARDAAIKRFTNDPDCRIFLTSLKAGGVALNLTVASHVFLMDPWWNPAAERQAQDRIHRIGQFKPIRIVRFIIENTVEERILNLQQKKELVFEGIIGGSSDALGKLTEGDLKFLFGT 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00732 834 MobiDBLite consensus disorder prediction 30 77 - -
Aip08g00732 834 CDD SF2_C_SNF 662 789 - -
Aip08g00732 834 Gene3D - 504 832 IPR027417 -
Aip08g00732 834 Pfam Helicase conserved C-terminal domain 664 778 IPR001650 -
Aip08g00732 834 Pfam Zinc finger, C3HC4 type (RING finger) 580 619 IPR018957 GO:0046872
Aip08g00732 834 SMART ultradead3 155 427 IPR014001 -
Aip08g00732 834 MobiDBLite consensus disorder prediction 78 105 - -
Aip08g00732 834 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 346 670 - -
Aip08g00732 834 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 303 - -
Aip08g00732 834 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 671 831 - -
Aip08g00732 834 Gene3D - 129 500 IPR038718 -
Aip08g00732 834 PANTHER - 671 831 - -
Aip08g00732 834 PANTHER - 346 670 - -
Aip08g00732 834 PANTHER - 104 303 - -
Aip08g00732 834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 580 632 IPR013083 -
Aip08g00732 834 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 409 IPR014001 -
Aip08g00732 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 482 IPR027417 -
Aip08g00732 834 CDD DEXDc_SHPRH-like 159 482 - -
Aip08g00732 834 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 833 IPR027417 -
Aip08g00732 834 SMART ring_2 580 619 IPR001841 -
Aip08g00732 834 MobiDBLite consensus disorder prediction 1 105 - -
Aip08g00732 834 Coils Coil 651 671 - -
Aip08g00732 834 Pfam SNF2-related domain 173 557 IPR000330 GO:0005524|GO:0140658
Aip08g00732 834 SUPERFAMILY RING/U-box 571 623 - -
Aip08g00732 834 SMART helicmild6 695 778 IPR001650 -
Aip08g00732 834 ProSiteProfiles Zinc finger RING-type profile. 580 620 IPR001841 -
Aip08g00732 834 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 664 824 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00732 Aip-Chr8 7178830 7187207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00732 115 834 RAD5 or RAD16-like Gene Family AT1G05120 64.737 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip08g00732 SNF2_N 6.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00732 K15083 - gmx:100786366 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00732 08 7178830 7187207 Aip08g00732 08 7178830 7187207 ECH