Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00730 ATGGAGTGGATTAGAGGCCAAATCATAGGCCAAGGCTCCTCAGCCACCGTATGCCTAGCTGGCACCACCACCTCTGCCGCCGTCTGTGCCGTCAAGTCAGCAGAGCTCTCACAATCACAACACCTCCAAAGAGAACAAAAAATCTTGTCCTCACTCTCTTCACCACACATAGTAACCTACAAAGGCTTTGATATCACAAAAGAGAAAAGCAAGCTCATGTTCAACCTCTTCATGGAGTATATGCCCCATGGAACACTCTCTAACCACGGTGGCCGCCTCCTGGAGCCGGCGATTGCACACTACACAAAGCAAGTTCTAAAGGGGCTAGAATACTTGCACTCAAGAGAGTTGGTGCATTGTGACATAAAGGGTAGTAACATCCTTGTTGGTGAAGGTAACTGTGTCAAAATTGCTGACTTCGGATTAGCAAAGAGCCTAAATGAGTCAGCCCGGGTGCCACTGGCTGGCACCCCGGCTTTCATGTCGCCGGAGGCGGCTCGGGGGGAGGAGCAGGGGTACCCTTGTGATGTTTGGGGAATTGGATGCACTGTGATTGAGATGGCCACTGGTTGTTCACCATGGCCTAAAGTTAAGGACCCTGTTTCAATGCTGTACCATGTTGGATATTCCGGTGAGGTTCCTGAGATTCCGGGGTTTCTTTCTGAAGAAGCAAAGGATTTCTTGGAGAAGTGTCTTAGGAGGAATCCAAGAGAAAGATGGAGTGCTAGCCAATTGCTGAATCATCCATTTCTTGGGGAATTCAGTTCCAAAGATGGTGATTGTGTTCTTGGGGAATCCAATAGTTCATCATGGTCTCCTACTAGTATTCTTGATCAAGGATTTTGGAATTCTGTGGAGGAATCAGAATGCCCCATTGCTGGGGATTTTGTTCAAACATGTTGTGTGCATTCCGCTTCTGATAGGATCAAGAAGCTGGCTCTGTGTTCTGGTGACCCCAATTGGAATTGGGAAAGTGAGAATTGGATCACAACTAGAGGGAATAACAATAACGAGAGTTCTTGTTCTTGCATTGGTGGATCAATGATAGCTTCAAGTTCAGCTAGTGATTGTTGGTGTGAGGTGGAGAAAAGTAATAATAATAATAATAATGACGATGATAATGTTATTAATAGTAATTGTAGAATTAATAGTTGTTTTTATGAGGATTTTAAATGTAGGGATGTTAGGGTTGTAGTAAATAGTGTCAATTTTCAGAAAATGCATCCTTTGACATTAGATATTTTATAG 1248 0.4423 MEWIRGQIIGQGSSATVCLAGTTTSAAVCAVKSAELSQSQHLQREQKILSSLSSPHIVTYKGFDITKEKSKLMFNLFMEYMPHGTLSNHGGRLLEPAIAHYTKQVLKGLEYLHSRELVHCDIKGSNILVGEGNCVKIADFGLAKSLNESARVPLAGTPAFMSPEAARGEEQGYPCDVWGIGCTVIEMATGCSPWPKVKDPVSMLYHVGYSGEVPEIPGFLSEEAKDFLEKCLRRNPRERWSASQLLNHPFLGEFSSKDGDCVLGESNSSSWSPTSILDQGFWNSVEESECPIAGDFVQTCCVHSASDRIKKLALCSGDPNWNWESENWITTRGNNNNESSCSCIGGSMIASSSASDCWCEVEKSNNNNNNDDDNVINSNCRINSCFYEDFKCRDVRVVVNSVNFQKMHPLTLDIL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00730 415 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00730 415 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00730 415 CDD STKc_MAPKKK 2 251 - -
Aip08g00730 415 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Aip08g00730 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Aip08g00730 415 Gene3D Transferase(Phosphotransferase) domain 1 2 278 - -
Aip08g00730 415 SUPERFAMILY Protein kinase-like (PK-like) 3 255 IPR011009 -
Aip08g00730 415 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 350 - -
Aip08g00730 415 Pfam Protein kinase domain 6 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip08g00730 415 PANTHER MAP KINASE KINASE KINASE 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00730 Aip-Chr8 7170142 7171459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00730 3 349 MAP Kinase Kinase Kinase AT5G55090 49.322 4.26e-113 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip08g00730 Pkinase 1.3e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00730 K20716 - gmx:100797801 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00730 08 7170142 7171459 Aip08g00730 08 7170142 7171459 ECH
Aip08g00730 08 7170142 7171459 Aip03g01525 03 16761250 16768648 PCT