Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00720 ATGGAGGGATCTCCTGGGATTGAAGATAGCGGCAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGACGATGCTTGCAGCATCTGTCTTGAAGCCTTCTGTGACAGTGATCCTTCCACCGTGACAAGTTGCAAGCATGAGTTTCATTTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGTCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCATCCAGCCAGGAACTTCTTGAGGCTGTGGAAAGAGAGAGGAACTTTAGGTTAAATCCACCTAGAAACGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAGGAGCATATAATCCAACACTTGGCTGCTGCTGCTGCAATGGGCCGAGCACGTCACATTGCAAGACGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCTCATTTTTTGGTATGGTCGACCCATCCCAATTCTCCTCCTGTCGCTCCTGCTTCTTCCTCTCCTACTCACAGCCAGAGGGGGGACGGTGAACCAACACCTGCAGTTACTTTTGCCACTCTTTCTCCAGCTCCTGCAACTGGAGAAGAATCACCACAGCTTATTTCAGTTCCTCCTGTTCTAGCTGAACAGGTTTCTGCTTCAGGATCTGGGCCTGCTGTACACACCACTGATCATCAGGGATCATCTAACAATAGGAGATCTCCTAGCCAGTCTTCTCCAAGTAGTCAGGATAGAGCGGGGCCATCGGAATTACAGTCCTTTTCAGAATCCCTGAAATCTAAATTAAATGCTGTGTCGTCAAGATACAAGGAGTCAATTTCGAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAATACTTCTATGTCTGATATTGGATCTGAAGTCAGACGAGAAGTTAATGCTGGGATTGCAACTGTGTCACGAATGATGGAACGCCTGGAAACCAGAGACAGTAACAGAAGTAATAGCAATACCAATAGCAATACTGCACCAAGTAATTTGGAGCATGGTTCAGGTCAGGGATCAAGTGATCCGCATTTAACAGAACCTGAAGGGAGTCAACTGAGAGACACCAACACAAAAACATCTTGTGCTGCAGGTTCTAGTTCTAGTTAA 1191 0.4719 MEGSPGIEDSGKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHFQCILEWCQRSSQCPMCWQPISLKDPSSQELLEAVERERNFRLNPPRNATIFHHPTLGDFELQHLPVGANDADLEEHIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVWSTHPNSPPVAPASSSPTHSQRGDGEPTPAVTFATLSPAPATGEESPQLISVPPVLAEQVSASGSGPAVHTTDHQGSSNNRRSPSQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTRGWKERWFSRNTSMSDIGSEVRREVNAGIATVSRMMERLETRDSNRSNSNTNSNTAPSNLEHGSGQGSSDPHLTEPEGSQLRDTNTKTSCAAGSSSS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00720 396 MobiDBLite consensus disorder prediction 344 396 - -
Aip08g00720 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 85 IPR013083 -
Aip08g00720 396 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 395 - -
Aip08g00720 396 MobiDBLite consensus disorder prediction 237 295 - -
Aip08g00720 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 395 - -
Aip08g00720 396 SUPERFAMILY RING/U-box 29 83 - -
Aip08g00720 396 MobiDBLite consensus disorder prediction 171 396 - -
Aip08g00720 396 SMART ring_2 36 76 IPR001841 -
Aip08g00720 396 MobiDBLite consensus disorder prediction 180 198 - -
Aip08g00720 396 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Aip08g00720 396 Pfam Ring finger domain 35 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00720 Aip-Chr8 6946918 6950616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00720 33 84 C3H Transcription Factor Family AT4G00335 42.308 1.92e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00720 K19043 - gmx:100814908 600.127