Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00704 ATGGATAATGAAATTGAGGTTCCTGCACATTTTCTCTGCCCAATATCCCTTCAACTCATGAGAGACCCTGTAACCGTTTGCAGCGGTATCACTTACGACAGAGAGAACATAGAGAAATGGTTATTCTCATGCAAAAACGAATCATGCCCGGTTACCAAACAGTCCCTAATACAACACACAGATCTTGATCTTATTCTTACTCCAAACCACACCCTACGAAGGCTCATCCAATCATGGTGCACCGTAAACGCCTCTCTCGGAGTCGAGCGTATCCCTACTCCAAAACCGTCCATGGACGCATCGTCTCACATCGCCAAACTGATCTCCGAAGCGAAGCGATTCCCGGAGACTAAGGAGAATTGCCTCGCAACACTCAGATCCATGGCGTTCTTTGAAAGGAACAAGAGCTGTTTCGAGTCTTCAGGTGCAATAGAGTTCTTAGCTACAATCATGATGAAGAACAACAATCGCGCCGAAGAAGAAGAACGAGATCTAACTGAAGCTGCGATTGAGATCTTGTTTCATCTTGATCTCTCGGAAAATCAGATCAAGAAGCTAATCAACAACGAGTGCCTTCAGTTTCTTGAATCGTTGCTGCAAGCGTTGAAGCGTGGGAGCTGCCAATCAAGAGCGTACGCAACACTTCTTTTGAAATCGGCATTTGCGGTTTCAAATCCGATCCAGTTAATCAGCGCGAAAACCGAAATGCTGTTTGAAATCACGAGAGTGATACGCGATCGTATATCGCAGCAGGCTCATAAGGCGGCATTGAAGCTGGTGGTTGAGCTCTGTCCATGGGGAAGAAACAGAATCAAAGCGGTGGAAGCCGGCGCGGTGTCCGTGCTCGTGGAAGTGCTTCTTGATTCGACGGAAAGAAGAACGTGTGAGCTGGCGTTAATGGCGTTGGATCAGCTTTGCGGTTGCGCGGAAGGGCGCGCGGAGTTGGTGAAGCACGGCGCGGGAATCGCCGTGGTTTCGAAGAAAATATTGAGAGTTTCACGCGCCGCGAGTGACAGAGGAGTTAGGATATTAGCGTCGGTTTGTAGGTTCTGTGGAAGCGGGAGAGTAGTTCAAGAGATGATGCAGGTAGGAGCCGTTAACAAGCTGTGTTTGGTGCTTCAAGTTGATAGCGCTTTGAAGACCAAAGAGAGAGCTAAAGAGATTCTCAAGTTGCATTCTCTGATTTGGAAGAATTCAACATGTATTCCTCTACCTTTGTTATCATCGTATCCATGA 1236 0.4749 MDNEIEVPAHFLCPISLQLMRDPVTVCSGITYDRENIEKWLFSCKNESCPVTKQSLIQHTDLDLILTPNHTLRRLIQSWCTVNASLGVERIPTPKPSMDASSHIAKLISEAKRFPETKENCLATLRSMAFFERNKSCFESSGAIEFLATIMMKNNNRAEEEERDLTEAAIEILFHLDLSENQIKKLINNECLQFLESLLQALKRGSCQSRAYATLLLKSAFAVSNPIQLISAKTEMLFEITRVIRDRISQQAHKAALKLVVELCPWGRNRIKAVEAGAVSVLVEVLLDSTERRTCELALMALDQLCGCAEGRAELVKHGAGIAVVSKKILRVSRAASDRGVRILASVCRFCGSGRVVQEMMQVGAVNKLCLVLQVDSALKTKERAKEILKLHSLIWKNSTCIPLPLLSSYP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00704 411 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Aip08g00704 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Aip08g00704 411 ProSiteProfiles Leucine-rich repeat profile. 172 193 IPR001611 GO:0005515
Aip08g00704 411 CDD RING-Ubox_PUB 11 54 IPR045210 -
Aip08g00704 411 PANTHER WDSAM1 PROTEIN 6 411 IPR045185 GO:0061630
Aip08g00704 411 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Aip08g00704 411 Coils Coil 151 171 - -
Aip08g00704 411 Pfam U-box domain 7 82 IPR003613 GO:0004842|GO:0016567
Aip08g00704 411 Gene3D - 231 390 IPR011989 -
Aip08g00704 411 SUPERFAMILY ARM repeat 104 217 IPR016024 -
Aip08g00704 411 Gene3D - 96 226 IPR011989 -
Aip08g00704 411 SUPERFAMILY RING/U-box 5 84 - -
Aip08g00704 411 SUPERFAMILY ARM repeat 195 376 IPR016024 -
Aip08g00704 411 PANTHER OS11G0573500 PROTEIN 6 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00704 Aip-Chr8 6714431 6715666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00704 1 411 U-box Gene Family AT2G35930 52.885 3.65e-148 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00704 - - gmx:100778012 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00704 08 6714431 6715666 Aip08g00704 08 6714431 6715666 ECH
Aip08g00704 08 6714431 6715666 Aip03g01459 03 15700375 15701894 PCT