Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00703 ATGGCGGAAATCGAAGTTCCTGAGTTGTTGCTGTGTCCCATCTCGCTTGAGATAATGAAGGACCCGGTGACAACCGTAACAGGGATAACATACGACAGAGAAAGCATAGAAGAATGGCTGCAGCAGAAATCTAATAAGAAGGATTGTATGTGTCCTGTTACAAAGCAACCATTGCCGACGGACTCTCATTTCTTGACTCCAAACCACACCCTCCGGAGGTTCATCCAAGCCTGGTGTTCAGCCAACGAATCCAACGGCGTCGATCGGATTCCCACCCCCAGGTCCCCTCTCGACAACTCCCAACTTCACAAACTCCTCACAGATCTTGATGCTCCTCGCACCTTTCAAACCTCATTGAACAAGATGCATGATCTAGCCACTCAGAGCCAGAGGAACCGCAACTTCATGGCTCAACAACGAGTACCCAAGGCCATGGTACAATTCATCACAACCACTTTCAAACAAGGCAAAACCAGCGGCGTTGAAGAAGCTCTGAGAATTCTTCGCTTACTATGGAGGAGCACTTCATCATCATCATCATCGTCATCCTCGCCAACTGGCGGCGGCGGCGGCACAAACATGAAGCCCCTGGTAGGTGAAACCTTGGACTTCATCAAATCGTTGACTTGGATTCTTCAACTCCCAATAATCGACAATGACCTTAACATGGTTAACGAAGCAATGCAAATTCTAAAGCTGACCATCGAAATCACCGATTCAACGCTCTTGGGAAGCTTAAACCACGAGTTCTTCAAACAAATCGTGAGCACCATGACGAGACTAAGCAAATCATCATCATCAATTCACCAAAATGCCCTCAAATCCGCGTTACACGTGCTCATAGAAACATGCCCCTTAGGAAGAAACAGAACGAAGATCGTGGAATCCGGTGCAGTTGGCGAACTCATCGAACTGTCCATCGATAAACCAACGGAGAAGAACCTAACGGAGCTTATATTCAAGCTGTTGGGTCAACTGTGCTCGTGTGCAGAAGGGAGAGAAGAGTTTTTGAAGCACCCGGCCGGAATCGCTGTTGTTTCGAAGAGGACGCTGAGGGTATCGGCAGCGACTGATGATCGAGCCCTTCATGTGTTATGGCTGATTTCAAAGTTTTCAGCTACGAATGAGGTGGTTCGAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTATGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAACAAAAGGCAACAGATATTCTTAGGTTTCATGCAAAGGCTTGGAATAATTCTCCTTGTATTCAAGTCTATTTGTTAACTAGACACCCAAGATGA 1302 0.4693 MAEIEVPELLLCPISLEIMKDPVTTVTGITYDRESIEEWLQQKSNKKDCMCPVTKQPLPTDSHFLTPNHTLRRFIQAWCSANESNGVDRIPTPRSPLDNSQLHKLLTDLDAPRTFQTSLNKMHDLATQSQRNRNFMAQQRVPKAMVQFITTTFKQGKTSGVEEALRILRLLWRSTSSSSSSSSSPTGGGGGTNMKPLVGETLDFIKSLTWILQLPIIDNDLNMVNEAMQILKLTIEITDSTLLGSLNHEFFKQIVSTMTRLSKSSSSIHQNALKSALHVLIETCPLGRNRTKIVESGAVGELIELSIDKPTEKNLTELIFKLLGQLCSCAEGREEFLKHPAGIAVVSKRTLRVSAATDDRALHVLWLISKFSATNEVVREMLRVGAVSKLCMVMQADCASYLKQKATDILRFHAKAWNNSPCIQVYLLTRHPR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00703 433 PANTHER WDSAM1 PROTEIN 1 432 IPR045185 GO:0061630
Aip08g00703 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Aip08g00703 433 SUPERFAMILY ARM repeat 220 411 IPR016024 -
Aip08g00703 433 SUPERFAMILY RING/U-box 4 87 - -
Aip08g00703 433 Gene3D - 100 420 IPR011989 -
Aip08g00703 433 SMART Ubox_2 9 78 IPR003613 GO:0004842|GO:0016567
Aip08g00703 433 ProSiteProfiles U-box domain profile. 5 85 IPR003613 GO:0004842|GO:0016567
Aip08g00703 433 Pfam U-box domain 6 83 IPR003613 GO:0004842|GO:0016567
Aip08g00703 433 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00703 Aip-Chr8 6708718 6711086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00703 3 432 U-box Gene Family AT2G35930 39.261 8.24e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00703 - - adu:107461999 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00703 08 6708718 6711086 Aip08g00703 08 6708718 6711086 ECH
Aip08g00703 08 6708718 6711086 Aip03g01455 03 15626092 15628120 PCT