Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00697 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTAAAAGTTAGGGTTCTAAGGCTTTGGGTTGTCCCCTCTTTTGGGAATCATGATGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATAAATTCAAATTGGTTTTCCTTCACCGAATCATTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTTCTTTTTCTGAACTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGACTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGAGAAAATTGTGAAAATGATTGTGCTTGAATTAACTTCAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATTATTTCCTTGCTTCTGGCTATGTGGAGCAGCCTGTTGTAGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACACAAATATTATTTAATCCTGATCTTTCTGAAGTTGTGGAATTCAGGCAGAGATTTAAAATTAAAGTAACAGTTGAAGATCATAGTGGGGAGGATATTTTCCTTCTCTTTGATTGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACCGAGGAGCCTGATTTACACAAATCTGTTCCCTGTGGAGAAGGAGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGCTAGTGAGTCTTCTGGGATTTTATCTAAAACCCCATTTTTTATAGATTTTTTGGCTGGAAAACAGCCTGCTATTTCCGAAGGGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAATGATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGTCTCCTCCAAGGGCAAGAGAAATCTGAATCCCCAATTTCAAGAGGCTGCTGCTGATGCAGATGGGCGTGGGTTCAAGATTGCCAAGGTTAATAGAGTTTGA 1311 0.3783 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNSMEMILLDEHCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHKFKLVFLHRIIVVAVDEDVIPKTCFNMFSFSELLNMTQDYDFLVDVIGLLTSVGEEKEYAKEEKIVKMIVLELTSKDLTVRCALFGDYVNQVNYFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQILFNPDLSEVVEFRQRFKIKVTVEDHSGEDIFLLFDCEASYLLKKSCADLFTEEPDLHKSVPCGEGDIGIKKESSKTFIKSEKVASESSGILSKTPFFIDFLAGKQPAISEGTEFASLINGEHGNDEKTPSNDTVSDDLSAELDILLSSPEKETQEVLSHVIDAPSQYGEKLIHENHVVSSKGKRNLNPQFQEAAADADGRGFKIAKVNRV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00697 436 Gene3D - 4 112 IPR012340 -
Aip08g00697 436 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Aip08g00697 436 CDD RPA1_DBD_B_like 140 243 - -
Aip08g00697 436 CDD RPA1_DBD_A_like 19 107 - -
Aip08g00697 436 Gene3D - 114 254 IPR012340 -
Aip08g00697 436 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 276 - -
Aip08g00697 436 SUPERFAMILY Nucleic acid-binding proteins 3 111 IPR012340 -
Aip08g00697 436 PANTHER REPLICATION FACTOR A 1, RFA1 22 276 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g00697 436 Pfam Domain of unknown function DUF223 43 130 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00697 Aip-Chr8 6538896 6541766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00697 8 255 Core DNA Replication Machinery Family AT2G06510 25.869 9.43e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00697 - - ahf:112717561 430.254