Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00676 ATGGTGGACAGGGATTCAAGCGAAGCACACATGTCAATAGCAGCTTCTTCGATATTCCCTGGCTTTAGGTTCTGTCCCACTGACGAGGAGTTGATCTCTTATTACCTCAGGAAAAAGCTGGACGGTGATGAGGACAGTGTTCAGGTCATTTCGGAGCTTGAGCTTTGCACATTTGAGCCTTGGGATTTGCCAGGAAAATCCTTCATTCAATCTGACAACGAGTGGTTTTTCTTCTCGCCACGGGGGAGAAAGTATCCCAATGGTTCACAGAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACAGGGAAAGAACGCGTTGTAAAGTCTGGTCAGAATGTTATTGGTACCAAACGCACTTTGGTATTCCATCTCGGTCGAGCTCCTAAAGGCGAAAGAACTGAATGGATTATGCATGAGTACTGCGTCAATGACAAATCTCAGGATTCATTGGTAATTTGTCGGCTCAAGAGGAATACAGAATTCCGTGCAAGTGATCATTCTAACAGAACTTCACACGATAGTGATTGTGGAGTCTCAGAAGGAGTTACAGTTCAAGGGGACACTTATGTGCCTATTCAAGATAAAGAGACTGGATGCAGCTCCAAGAGGACTAGCAGTAGTAATAGTTCTCCATCTACTACTGGCCAAATTGAATCCAGTCATAGAGTTGCCAATGAAGGCAATGAAGCCAATCAAGCAAATGAAGCCAATGTAGCCAATGAAATCAATCAAGTCAATGAAGCCATTGAAGCTAATGTAGCCAATATAGCCAAGGAAGCCAATCAAGCCAATGAAGTCAGTGTAGCCAATGAAGTTAATATAGCCAATGAAGCCAATCAAGTCAATCAAGCCAATGAAGCCAATGTAGCCAATCCCAGAAATCACCCTCAGGTGAATGAAGAAGAGGATTGTTATGCAGAGATCCTAAATGATGATATCATCAAGTTAGATGAATCAACACTCTCACGGCCATCGCCACCACAAGGGACAGCAAACAGGAGAATCAGGCTAAGGGTTCCCAAATCAACAGTTCCCAAATCAAGGGTTCCCAAATCAAGGGTTCCAACGGGAAATGGTTGTCAATGTTCCAAGCAATCATCAAACAAAATTAACACCTTCCTGTCATACCCTTTGGTGGTCTTCACTTTCTTCGTTTTCACTTTGTTAGCTCTAGGCTTCTTTTTTATTAGGAGGTCCCAAACTACTGCCCAATATTCTCAAGACCTCTCTAGAGTTTAA 1245 0.4321 MVDRDSSEAHMSIAASSIFPGFRFCPTDEELISYYLRKKLDGDEDSVQVISELELCTFEPWDLPGKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERVVKSGQNVIGTKRTLVFHLGRAPKGERTEWIMHEYCVNDKSQDSLVICRLKRNTEFRASDHSNRTSHDSDCGVSEGVTVQGDTYVPIQDKETGCSSKRTSSSNSSPSTTGQIESSHRVANEGNEANQANEANVANEINQVNEAIEANVANIAKEANQANEVSVANEVNIANEANQVNQANEANVANPRNHPQVNEEEDCYAEILNDDIIKLDESTLSRPSPPQGTANRRIRLRVPKSTVPKSRVPKSRVPTGNGCQCSKQSSNKINTFLSYPLVVFTFFVFTLLALGFFFIRRSQTTAQYSQDLSRV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00676 414 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Aip08g00676 414 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Aip08g00676 414 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 397 - -
Aip08g00676 414 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Aip08g00676 414 Coils Coil 241 268 - -
Aip08g00676 414 Gene3D NAC domain 27 164 IPR036093 GO:0003677|GO:0006355
Aip08g00676 414 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 12 397 - -
Aip08g00676 414 MobiDBLite consensus disorder prediction 189 223 - -
Aip08g00676 414 MobiDBLite consensus disorder prediction 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00676 Aip-Chr8 6319197 6321190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00676 6 192 NAC Transcription Factor Family AT2G27300 65.775 2.29e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip08g00676 NAM 5.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00676 - - adu:107462050 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00676 08 6319197 6321190 Aip08g00676 08 6319197 6321190 ECH