Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00643 ATGGGTTTGAGGGAAAATAAGAATTTATACCGTCACAATAATAATAACAACCCAAGTTTCATTGAGTGGCTCAAACCATCTTCATCTCTAACTAGTTCACTATTTTTATCATCACAAACTCCACCTCCCTGTGTCACTGATGAACACCGAGAAACTATAGAGTTTTTTCCCATTTTAAAGAAGAAGGAAGAAGAAGAAGACGAAGAAGGTATTGAGGTGAAAGAAGAGAAGGTGGAACAACAACAACAGTTGATGACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTGTTGCTGCTGATGATGATGAGAAAAAGAAGGTTTTGCATGTTAAGGAGGAGGAAGAAAAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAGTTATTGGAGAGAAGATTATTGGAGAATTGGTGGTTAAAGCAGGAAGAGAATAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGCAGCAAAACTTTCAACAGATATAACAATATGCAGATGCATATGTGGGGGCATGGTTCGGAATTCAGGAAAGGGCCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAAGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCATTGAAGGATTTCAGAACTCTGCAAACACACTACAAGAGAAAGCATGGCACCAAGCCCTTCATGTGTAGAAAATGTGGCAAAACATTTGCTGTTAAAGGTGATTGGAGGACTCATGAGAAGAACTGTGGTAAGCTTTGGTATTGCACTTGTGGTTCCGATTTCAAGCATAAGAGGTCCCTTAAGGATCACATTAGATCCTTTGGTAAGGGTCACTCTCCTCATCCTTCTCTTGAAGGTTTTGAGGATGAGAAGGAATGCATTACCACTGGCTCTGATGAAGATGAACCTAAGTAG 993 0.4048 MGLRENKNLYRHNNNNNPSFIEWLKPSSSLTSSLFLSSQTPPPCVTDEHRETIEFFPILKKKEEEEDEEGIEVKEEKVEQQQQLMTVALHIGLPTNNTVGVVAADDDEKKKVLHVKEEEEKEKEKEEEEEEEEKLLERRLLENWWLKQEENKRFWIPSPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECITTGSDEDEPK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00643 330 Gene3D Classic Zinc Finger 168 191 - -
Aip08g00643 330 Coils Coil 109 143 - -
Aip08g00643 330 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 47 327 - -
Aip08g00643 330 Coils Coil 59 81 - -
Aip08g00643 330 Pfam Zinc finger, C2H2 type 169 188 IPR013087 -
Aip08g00643 330 SMART c2h2final6 216 248 IPR013087 -
Aip08g00643 330 SMART c2h2final6 253 273 IPR013087 -
Aip08g00643 330 SMART c2h2final6 169 191 IPR013087 -
Aip08g00643 330 SUPERFAMILY beta-beta-alpha zinc fingers 148 192 IPR036236 -
Aip08g00643 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Aip08g00643 330 MobiDBLite consensus disorder prediction 299 330 - -
Aip08g00643 330 Gene3D Classic Zinc Finger 251 300 - -
Aip08g00643 330 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Aip08g00643 330 SUPERFAMILY beta-beta-alpha zinc fingers 239 273 IPR036236 -
Aip08g00643 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 273 IPR013087 -
Aip08g00643 330 PANTHER ZINC FINGER PROTEIN WIP2 47 327 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00643 Aip-Chr8 6005488 6014715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00643 17 322 C2H2 Transcription Factor Family AT1G08290 56.083 3.09e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g00643 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00643 - - ahf:112706908 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00643 08 6005488 6014715 Aip08g00643 08 6005488 6014715 ECH