Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00640 ATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAACAAGCGGTGCAAGAAGACAATGCCGGAAACTACGCCAAAGCGTTCCCTTTGTACATGAACGCCTTGGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAGAGAAGCAATTACCCAGAAGTTCACCGAGTACCTTCGTCGTGCGGAGGAGATCCGTGCCGTCCTCGACGACGGCGGCCCCGGTTCGGGGGCATCCAACGGGGATGCTGCAGTTGCCGCTAGGCCCAAGACCAAGCCCAAGGGCGGGGAAGGTGGTGGTGGGGATGGGGAAGACCCGGAGCAGGCGAAGCTGCGGGCCGGGCTGAACTCCGCGATCATAAGAGAGAAGCCCAACGTGAAGTGGAATGATGTCGCGGGATTGGAGAGTGCCAAGCAGGCTTTGCAGGAGGCTGTGATTTTGCCTGTCAAGTTCCCTCAGTTCTTTACTGGTAAAAGACGACCATGGCGAGCATTTTTGTTGTATGGACCACCTGGAACAGGTAAATCATATTTGGCCAAGGCTGTTGCAACAGAAGCTGACTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTCTCAAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAGCCTTTTCCAAATGGCCCGAGAAAGTGCTCCTTCTATAATATTTATCGATGAAATAGATTCCCTTTGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGAATTAAAACAGAACTTCTGGTCCAAATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCGACAAATACACCCTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCAGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCATCTGGGAGATACTCCCAACAACTTGACTGAAAAGGATTTTGAATACTTGGCTAGCAGGACTGATGGGTTTTCTGGTTCAGATATATCTGTCTGTGTAAAGGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTACTTCTATAAGAGTCCCGAGGGTATGTGGATCCCTTGTGGACCAAAGCAACCGGGTGCAATACAAACCACCATGCAGGACCTTGCTTCAAAAGGACTTGCTTCTAAGATTCTTCCACCGCCGATTACTAGAACGGATTTTGAGAAGGTACTTGCTAGGCAAAGACCTACAGTTAGCAAAGCTGACCTTGATGTTCATGAAAGATTCACCAAAGAGTTCGGAGAGGAAGGTTGA 1311 0.4775 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGSGASNGDAAVAARPKTKPKGGEGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPNNLTEKDFEYLASRTDGFSGSDISVCVKDVLFEPVRKTQDAMYFYKSPEGMWIPCGPKQPGAIQTTMQDLASKGLASKILPPPITRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00640 436 MobiDBLite consensus disorder prediction 73 112 - -
Aip08g00640 436 Pfam Vps4 C terminal oligomerisation domain 369 433 IPR015415 -
Aip08g00640 436 SMART AAA_5 165 301 IPR003593 -
Aip08g00640 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 432 IPR027417 -
Aip08g00640 436 SMART smart 2 79 IPR007330 -
Aip08g00640 436 ProSitePatterns AAA-protein family signature. 271 290 IPR003960 GO:0005524|GO:0016887
Aip08g00640 436 Gene3D - 128 424 IPR027417 -
Aip08g00640 436 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 436 - -
Aip08g00640 436 CDD AAA 136 299 - -
Aip08g00640 436 Gene3D - 6 75 - -
Aip08g00640 436 Gene3D - 301 416 - -
Aip08g00640 436 SUPERFAMILY MIT domain 2 82 IPR036181 -
Aip08g00640 436 CDD MIT_VPS4 4 77 IPR045253 -
Aip08g00640 436 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Aip08g00640 436 PANTHER AAA DOMAIN-CONTAINING 1 436 - -
Aip08g00640 436 Pfam ATPase family associated with various cellular activities (AAA) 170 299 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00640 Aip-Chr8 5967274 5971796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00640 164 357 Calmodulin-binding Proteins AT3G56690 36.224 5.83e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00640 K12196 - gmx:100806836 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00640 08 5967274 5971796 Aip03g00230 03 2281538 2285762 PCT