Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00620 ATGGCTGGAATAGTGGATCTTATTGCTGATATCAATGCTACCAAGCTTTCTTGGTCATTGGTTGTGGGTGTGTTTCGTCCTTTTGCTGAGCTTGAGTCAAATGGTGCCAGTGATAAAAATCTATTGTTTGATTACATAGGTGAGGTTGTGGGAAAGGAAGAGGCCAGGGGAATTATCACATGCACGGGTCACCAAAGCAAGCGTATTGCTCTGCAGTTGGAGGACCTAGAGAAGAATAAAATTAAGTGTACATTGTTTGGAGAGTTGGTTGACCAAGTGCTTCCACAACTTGAACGAGATGATGGGGAACCTTTCATATTAGTGGTCCAACTTTTTAAGACTAATGTCTATTTGAATTCACTGAATATTCAAAGTACCTACTATGTCTCCAAAGTTTACTTCAATCCAAATCTGACTAAGATAAATGAGTTTAAGCAAAGGTTGAATAAGGATATTATTTCCCCTTCACAACGCATTACTCAACTTCAGACCCAACCTCAATACTCTGCCACGGATGAGATCAACACAGGCATTGTTCCATTGAAGACTATAGAGGAGGAGACGTCGTGTTGGATTATTGCCAATATTGTATCTCTTGAGGTGGGAAAAGATGATTGGTGTTACACTTCATGTAAGACATGCCCGAAGAAGACCCAACCTCAATACTCTGCCACGGATGAGATCAACACAGGCATTGTTCCATTGAAGACTATAGAGGAGGAGATGTCATGCTGGATAATTGCCAATATTGTATCTCTAGAGGTGGGAAAAGATGATTGGTGTTACACTTCATGTAAGACATGCCCGAAGAAGGTTGTTGAAAGTAAAGATAGGTATTGGTGTGACCATTGTAGACGTGTAGGCTTCAAGGCTATGTTGAGGTATAGGCTACAAATAATTGTTACTGATGGAACTGGGTGTCTAAAGCTCATTGTGTGGAATAAAGAAGCAGAGCAGATGGTGGGAAAGCCTGCTGACAAAGTTAACGAGATATGTATGTGGGAAAAGACAAACTCATACCCAAAATACTTGGATAATGTTATTGACAAAAGATTCTTATTCAAACTGAACATTACATACAAGAATATAAATGCCATTGAGGGCGTATACAGTGTAACCAAGCTTTCAGATGAGGACTTCCTCATATCGAGCTTCGGGTGTGCCAGCTCTTCTGTTGAAGCCTTTGTAAGTATAATTTTTGGGAGCATTGCTAAGAGCGAATACTATCTTGGATGA 1236 0.4029 MAGIVDLIADINATKLSWSLVVGVFRPFAELESNGASDKNLLFDYIGEVVGKEEARGIITCTGHQSKRIALQLEDLEKNKIKCTLFGELVDQVLPQLERDDGEPFILVVQLFKTNVYLNSLNIQSTYYVSKVYFNPNLTKINEFKQRLNKDIISPSQRITQLQTQPQYSATDEINTGIVPLKTIEEETSCWIIANIVSLEVGKDDWCYTSCKTCPKKTQPQYSATDEINTGIVPLKTIEEEMSCWIIANIVSLEVGKDDWCYTSCKTCPKKVVESKDRYWCDHCRRVGFKAMLRYRLQIIVTDGTGCLKLIVWNKEAEQMVGKPADKVNEICMWEKTNSYPKYLDNVIDKRFLFKLNITYKNINAIEGVYSVTKLSDEDFLISSFGCASSSVEAFVSIIFGSIAKSEYYLG 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00620 411 PANTHER REPLICATION FACTOR A 1, RFA1 247 389 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip08g00620 411 CDD RPA1_DBD_B_like 44 148 - -
Aip08g00620 411 SUPERFAMILY Nucleic acid-binding proteins 235 380 IPR012340 -
Aip08g00620 411 Gene3D - 225 384 IPR012340 -
Aip08g00620 411 Gene3D - 23 153 IPR012340 -
Aip08g00620 411 SUPERFAMILY Nucleic acid-binding proteins 26 152 IPR012340 -
Aip08g00620 411 CDD RPA1_DBD_C 239 381 IPR013955 -
Aip08g00620 411 PANTHER BNAC01G35430D PROTEIN 247 389 - -
Aip08g00620 411 Pfam Replication factor-A C terminal domain 254 364 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00620 Aip-Chr8 5670290 5672756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00620 262 365 Core DNA Replication Machinery Family AT5G08020 33.962 2.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00620 - - aip:110265210 578.941