Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00606 ATGTTTTACACAACTTTGAATGCGTGTATCTATTTACTAGAATCTAAACATGCAACCTTAGTTTCCGTATATTTTTGCTCAATCTTTTATTTTTCCTTAACTTATGATTTGTTTCCTTCTAGCACTGAGGAGGATGATTTTTCAGACGATAGTAGCGATGAGGATCATCCATTGCCAGTTGCACAAAATGGAAAAACTGAAGTAAAAGTTGAGGAAGTAAAGGTTTCTCAATCTAAAAAATCTGATGCTCAGGCTGGTGCATCAAAACAAGTGAAGGTAGTTGAACCAAAGAAAACAGAGGATTCAGACGATGAATCTGATGAGGATGATGAAATGGACAGTTCAGATGAAGAGATGGAGGATGGCGAGAGTGATGAGGAGGGTGAAAGTGATGATGATGATGATGAGGAAGATACCCCACCCAAGAAGGTGGACCAAGGAAAGAAGAGGCCAAATGAATCTGCGACAAAAACTCCTATTTCTAACAAGAAAGCAAAAAATGCTACCCCTGAAAAGACCGATGCTAAGAAAGGTGGCCATACAGCAACTCCTCACCCAGCAAAGAAGGGTGGAAAGACTCCAAACAGTGATGGCAAGGACACTCCCAAATCTGGTGGACAATTCCTCTGCAAAAGTTGCAACAAGAATTTCAATTCTGAAACTGGTCTCCAGCAACATAGCAAGGCTAAGCATGGTCAGTGA 702 0.4074 MFYTTLNACIYLLESKHATLVSVYFCSIFYFSLTYDLFPSSTEEDDFSDDSSDEDHPLPVAQNGKTEVKVEEVKVSQSKKSDAQAGASKQVKVVEPKKTEDSDDESDEDDEMDSSDEEMEDGESDEEGESDDDDDEEDTPPKKVDQGKKRPNESATKTPISNKKAKNATPEKTDAKKGGHTATPHPAKKGGKTPNSDGKDTPKSGGQFLCKSCNKNFNSETGLQQHSKAKHGQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00606 233 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 27 229 - -
Aip08g00606 233 MobiDBLite consensus disorder prediction 167 181 - -
Aip08g00606 233 SUPERFAMILY beta-beta-alpha zinc fingers 202 230 IPR036236 -
Aip08g00606 233 Gene3D Classic Zinc Finger 195 233 - -
Aip08g00606 233 PANTHER HISTONE DEACETYLASE HDT1-LIKE 27 229 - -
Aip08g00606 233 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Aip08g00606 233 MobiDBLite consensus disorder prediction 41 233 - -
Aip08g00606 233 MobiDBLite consensus disorder prediction 101 139 - -
Aip08g00606 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 233 IPR013087 -
Aip08g00606 233 MobiDBLite consensus disorder prediction 197 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00606 Aip-Chr8 5387498 5390217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00606 151 231 C2H2 Transcription Factor Family AT5G03740 56.044 1.70e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g00606 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00606 - - lang:109358867 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00606 08 5387498 5390217 Aip08g00606 08 5387498 5390217 ECH
Aip08g00606 08 5387498 5390217 Aip03g00252 03 2475462 2477681 PCT