Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00598 ATGGGAAGCAAGGTCACAGTGACGGACCACCAATTGTCCACTGTCCGATCCATCGTTGGCTCCGAATTCACCGACATGGACATCATCAGAGCGCTCCATATGGCCAAAAATGACGTCACAGCCGCCATCAACATCATCTTCGACACTCACATTCCCTCCATCGTCAAACCTAAAACCACACCACCACCTACAAACAATCTCAAACCTTCTCCCCTCAATTCATCTCCTCATATGGATACTGCCACTCGCACTGTTGCTTCCCGCTCCAAGAACAATGGCGCTGCTGCTCGTGGAGGAGACGGCAGTAGCTGCTCCAAAGCGTCCGATGATTGGTGGTTTGCTGGTTCCGGCGAGATGTCAGGGCTGTCCACTTGTAAAGGGAGAACTATAAATTCTGGTGACACAGTGGTTTTCAAGTTTCCTGCCAAGGCTGCCTCGGCTGGGCCTTCGCCGGGAAAGGTCTTCGGGAGGGGGCGGCTGGCAGCGGGGACTTGTTCGGAGATTGTTCGGTTCTCCACAGATCAAGCTGGGGAGATTGGTAGAATACCAAATGAATGGGCTCGGTGTCTGTTGCCTCTTGTGAGGGATGGTAAGGTTAGAATTGAGGGGCGCTGTAAATTTGCACCTAATGTTTTGGGCATCATGGATACCATTATTTTGTCAGTCAGTGTATTTATCAATAGGTCAATGTTTGTTAAGCACCAGCAGATATCTCTCAAGGATGCCACTAGCAACTCTACAAATGAATCAGTTTTCCATCCTCTTCCTATCTTGTTTCGGTTGCTAGGCCTGGAACCTTTTAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTATCGACCAGAAGGTCCCTTTACAATTGATGAAATCTGAGCATCCTTCTCAAAATGGCGACGAAAATAAAGAGGATTCCATTTCTGAAACCGATCTTGATAATATTGTTGGTGTGGGATCAAGCTCGGAGTTAGAGGAAATGGATCCCCCAGGCAGTCTTCAGTGTGAGCTACGGCCCTATCAAAAGCAAGCTCTTTATTGGATGATCCAGATGGAGAAGGGGCGAACTGTAGACGGGACAGCAACAACCCTTCATCCATGTTGGGAAGCATATCGCTTGGCTGACAAGAGGGAGCTTACTATTTATTTGAATGCATTTTCTGGTGAAGCCACAACTGAATTTCCTAGCACCCTTCAAATGGCAAAAGGAGGGATTTTGGCAGATTCTATGGGTCTTGGAAAGACCATCATGGCCATATCACTTCTTCTTGCCCATTCAGGAAGAGGTGGATCATTAGGCAGTCAATCCTTAGCTCAGACTGAGCTGTATACTGAAGACGGTGAAGTTAGTGATACGGTACACAACTTTTCAAACATTCCGACGAAGGCAACCAAATTTGCTGGTTTTGACAAACTGATGAAGGACAAGGATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAAATTGAAACTCATGTACAACCTGGGTCTCTGTCCCTATATGTTCATTATGGACAGAATAGGCCAAGAGATGCAAAAAGTCTTTCTCAGTCTGATGTTGTTATTACTACATATGGTGTTTTAGCCTCTGAATTTTCCAGTGAGAACGCTGAGGATAATGGTGGACTTTTTTCAGTTAGGTGGTTCAGAGTGGTTCTTGATGAAGCACATACTATAAAATCTTCTAAAAGTCAAATTTCTATTGCTGCCGCTGCTTTAATTGCTGATAACCGTTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTTGAAGATATTTACAGTCTTCTTCGATTTCTGCGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAGCCATTTGAAGGAGGTGATGCGAGAGGGTTAAAGTTAGTTCAGTCCATTTTGAAGTCAATCATGTTGAGGAGAACCAAGTATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTCCCTCCGGCTGATGTGCAGGTAATTTACTGTGAACAAACAGAAGCTGAGAAGGACTTTTATGAGGCCTTATTCAAAAGATCTAAGGTCAGGTTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTGCTTTTACGGCTTCGGCAATGTTGCGATCATCCTTATCTTGTAATGAGCCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAACTAGCTAAACGCTTCCTTCGAGGAACCCATAATAATTTAGAACGTGAAGTAAAAGATGCACCGTCACTGGCTTATGTTCAAGAAGTAGTTGAAGAGCTACGTAAAGGGGAACAGGGTGAGTGTCCAATATGTCTTGAAGCCTTCGAAGATGCAGTGTTGACTCCTTGTGCTCACCGCCTATGCCGGGAATGCCTCTTGGCAAGTTGGCGCAATTCCACTTCTGGTTTATGTCCTGTTTGTAGAAAAACAGTTAGCCGGCAGGATCTTATTACTGCTCCTACTGATAGTCGGTTTCAGATTGATATTGAGAAGAACTGGATAGAGTCATGCAAGGTAACTGTTCTTTTGCATGAACTGGAAAGTCTTCGCGCATCAGGCTCCAAGAGCATTGTTTTTAGCCAATGGACTGCTTTTCTAGACCTTTTGCAGATTCCCTTTACACGGAATAACATTTCATTTGTTCGTCTTGATGGAACTTTAAATCAGCAACAACGGGAGAAAGTGATCAAACAATTCTCAGAAGATGATGAAATACTGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCTGCTTCAAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCTGTAGAAGAACAAGCAGTCATGCGCATCCATCGTATTGGACAAACACAGAAGGTAGCCATTAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGTGGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCCTGACTGATCAAGAGGTTCGAACTGCACGAATAGAGGAGCTGAAGATGCTTTTCACTTAG 3075 0.4488 MGSKVTVTDHQLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHIPSIVKPKTTPPPTNNLKPSPLNSSPHMDTATRTVASRSKNNGAAARGGDGSSCSKASDDWWFAGSGEMSGLSTCKGRTINSGDTVVFKFPAKAASAGPSPGKVFGRGRLAAGTCSEIVRFSTDQAGEIGRIPNEWARCLLPLVRDGKVRIEGRCKFAPNVLGIMDTIILSVSVFINRSMFVKHQQISLKDATSNSTNESVFHPLPILFRLLGLEPFKKAELTPGDFYSNKRPIDQKVPLQLMKSEHPSQNGDENKEDSISETDLDNIVGVGSSSELEEMDPPGSLQCELRPYQKQALYWMIQMEKGRTVDGTATTLHPCWEAYRLADKRELTIYLNAFSGEATTEFPSTLQMAKGGILADSMGLGKTIMAISLLLAHSGRGGSLGSQSLAQTELYTEDGEVSDTVHNFSNIPTKATKFAGFDKLMKDKDALTSGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQNRPRDAKSLSQSDVVITTYGVLASEFSSENAEDNGGLFSVRWFRVVLDEAHTIKSSKSQISIAAAALIADNRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDARGLKLVQSILKSIMLRRTKYSTDREGKPILVLPPADVQVIYCEQTEAEKDFYEALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCDHPYLVMSRGDTQEFADLNKLAKRFLRGTHNNLEREVKDAPSLAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTVSRQDLITAPTDSRFQIDIEKNWIESCKVTVLLHELESLRASGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVIKQFSEDDEILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTQKVAIKRFIVKGTVEERMEVVQARKQRMISGALTDQEVRTARIEELKMLFT 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00598 1024 Gene3D - 839 1022 IPR027417 -
Aip08g00598 1024 ProSitePatterns Zinc finger RING-type signature. 804 813 IPR017907 -
Aip08g00598 1024 CDD DEXDc_SHPRH-like 340 655 - -
Aip08g00598 1024 SMART HIRAN_2 114 226 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aip08g00598 1024 CDD RING-HC 789 828 - -
Aip08g00598 1024 MobiDBLite consensus disorder prediction 70 91 - -
Aip08g00598 1024 SUPERFAMILY RING/U-box 778 835 - -
Aip08g00598 1024 MobiDBLite consensus disorder prediction 295 315 - -
Aip08g00598 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 1013 IPR027417 -
Aip08g00598 1024 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 398 617 IPR014001 -
Aip08g00598 1024 CDD SF2_C_SNF 855 982 - -
Aip08g00598 1024 Pfam SNF2-related domain 343 734 IPR000330 GO:0005524|GO:0140658
Aip08g00598 1024 Gene3D - 399 667 IPR038718 -
Aip08g00598 1024 Pfam HIRAN domain 115 222 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aip08g00598 1024 Pfam Helicase conserved C-terminal domain 861 971 IPR001650 -
Aip08g00598 1024 MobiDBLite consensus disorder prediction 53 104 - -
Aip08g00598 1024 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 859 1019 IPR001650 -
Aip08g00598 1024 MobiDBLite consensus disorder prediction 299 313 - -
Aip08g00598 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 655 IPR027417 -
Aip08g00598 1024 Gene3D - 671 787 IPR027417 -
Aip08g00598 1024 Pfam Zinc finger, C3HC4 type (RING finger) 786 833 - -
Aip08g00598 1024 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 1024 - -
Aip08g00598 1024 ProSiteProfiles Zinc finger RING-type profile. 789 829 IPR001841 -
Aip08g00598 1024 SMART ultradead3 336 634 IPR014001 -
Aip08g00598 1024 SMART helicmild6 888 971 IPR001650 -
Aip08g00598 1024 SMART ring_2 789 828 IPR001841 -
Aip08g00598 1024 PANTHER DNA REPAIR PROTEIN RAD5 104 1024 - -
Aip08g00598 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 838 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00598 Aip-Chr8 5290641 5298508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00598 1 1024 RAD5 or RAD16-like Gene Family AT5G22750 71.854 0.0 1502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip08g00598 SNF2_N 3e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00598 K15505 - gmx:100794452 1635.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00598 08 5290641 5298508 Aip08g00598 08 5290641 5298508 ECH