Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00582 ATGAGTAGCCAGCAGAGAGTTGTGTCTTCTAGTGAAAACAGGGAAGACCAATCTTTAGAGATCGGTAACCAAATTGATCGTGTTCGGGATGGATTCGTTGTTAATCAGCATGACGGCCAATCTGAGCATACACGGAGGGGAATCCGTAGATTGCGTGGCCGGCAGGTTCTGCTTGATATGCTCAAGAAGGCTGAGGTGGAAAGGCAAAGAGAAGTTCAGGAGTTGTTTGAACACCGGGCTGTATCCCGTTTCCCCCACCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCAACTGATAATAACAGGTCCACTTCCATTGCGGAAAGTGAATTAGGTTTATTGAGGCAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTCCAGAAAGGACAATTCTGGTTGCAGTCAAGCAACAAGCAACCTTTCCGATGCCTCATCTGACACTGATGGTGATGTTAATGCAATTGAACATGCTGGAGCCAGCAGTTCACAAACTGTCCCATCTGTACATGCTAAAAAGTTGGAGTCTAATAACAGTGGAAGTGATGAAATTGGCATATCTGGCAGGGAAAACTGTTTTCAACAATCTACTTGTGAGAATCTAGACTGTCAAGATTCTGGTGCTTATGCTAATGAAATTGATCAGGCATTGGCATCAAGTGTTGAGGTTGAAGGCAGCGATAGCATTGGACAAAATGTTGTTATGGATACTGAAGATGCTTCTAGTGGCCTCACCCAACAAAGGTTGCAAATTGAAGGTAGAGATCCTAGCAATATGCAGGTAAATGAGGTACATATTGAGCAATCTGAGCTGGGTGGTATAACTGATAATGAAAGCTACTTATCACATCACAGCAATAGTATAGAGGGCAATATTGCTGCTGATGTAGATTGGGATGTATCTGTTGCTCCAGAAGTAGAGCAACCAGAAGAGGCTATTTCTGAAAATGAAGGAAGTGACTGGCATCAAACTAGCATTGAATGGAGTAGCACTGAGGATGGTGTTGACAATAATCAACTCGGTGGCTCATCAAATGAACTACCTCAAAACACATTTGGAAATGAAGATGGAGAAAATTCTCGCCTACAAGAAGGGCCTGAAGTGTGGCAGGAGGACAGCGGCTTTCAAGAGGCTGTAGAAATTTGGTTGGGAGGACCTTCTGATCATGAAGCAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCCGAAGATGACAATGTGTACAGTGTCGAACTCAGGGAACTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGCCTTGATCAGTTGATACAATCATACGTTGAAAGGCAGAGTCATGCTAATGTTGAGTGGGAGCTCCAAGAAACAACCACCCCTTTCTCTCCCTCGGCAGCGCAGGAGCTTGAGCAACAGAACAGGGATCCGATTGTTGGTACTCAGGATGCTGTTAATAGCTCACTTGGTCGTCAACCCTTGCCGCCACCACCTCCGCCACCGCCGATATGGGATCACCGCCGCTCCCGTCATGACAGATGGTCACCTCATGATATAAATAATCAACGCCTAGGAATGGAATGGGATGTCATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGAATGAACAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTGACCATGATTCACCAGATGATAAATCCAAATGGGAATGCGTGAGGAAAGGGGTTTGCTGCATTTGCTGCGAAAGCAATATTGATTCTCTCTTGTACAGATGTGGGCACATGTGCACATGTTCTAACTGTGCTAATGATTTGCACCGAAGTGGAAGGAAGTGTCCAATGTGTCAAGCACCAGTTGTTGAAGTAATTCGTGCTTATTCCATACTATAG 1992 0.4478 MSSQQRVVSSSENREDQSLEIGNQIDRVRDGFVVNQHDGQSEHTRRGIRRLRGRQVLLDMLKKAEVERQREVQELFEHRAVSRFPHRNRIQALLRGRFLRNDRSTDNNRSTSIAESELGLLRQKQTVSGLREGFFSRKDNSGCSQATSNLSDASSDTDGDVNAIEHAGASSSQTVPSVHAKKLESNNSGSDEIGISGRENCFQQSTCENLDCQDSGAYANEIDQALASSVEVEGSDSIGQNVVMDTEDASSGLTQQRLQIEGRDPSNMQVNEVHIEQSELGGITDNESYLSHHSNSIEGNIAADVDWDVSVAPEVEQPEEAISENEGSDWHQTSIEWSSTEDGVDNNQLGGSSNELPQNTFGNEDGENSRLQEGPEVWQEDSGFQEAVEIWLGGPSDHEAAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQSHANVEWELQETTTPFSPSAAQELEQQNRDPIVGTQDAVNSSLGRQPLPPPPPPPPIWDHRRSRHDRWSPHDINNQRLGMEWDVINDLRVDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSGTRDHDSPDDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSNCANDLHRSGRKCPMCQAPVVEVIRAYSIL 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00582 663 Coils Coil 539 566 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 166 193 - -
Aip08g00582 663 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 662 - -
Aip08g00582 663 CDD mRING-HC-C3HC5_NEU1 611 649 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 138 158 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 340 367 - -
Aip08g00582 663 ProSiteProfiles Zinc finger RING-type profile. 611 650 IPR001841 -
Aip08g00582 663 MobiDBLite consensus disorder prediction 1 18 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 138 193 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 580 600 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 340 379 - -
Aip08g00582 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 661 IPR013083 -
Aip08g00582 663 MobiDBLite consensus disorder prediction 1 21 - -
Aip08g00582 663 SUPERFAMILY RING/U-box 610 656 - -
Aip08g00582 663 Pfam Zinc finger, C3HC4 type (RING finger) 609 655 - -
Aip08g00582 663 PANTHER PROTEIN, PUTATIVE-RELATED 1 662 - -
Aip08g00582 663 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00582 Aip-Chr8 5091424 5095125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00582 611 657 C3H Transcription Factor Family AT3G06140 38.298 1.10e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00582 - - vun:114184870 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00582 08 5091424 5095125 Aip08g00582 08 5091424 5095125 ECH
Aip08g00582 08 5091424 5095125 Aip03g00273 03 2685848 2689414 ECH