Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00580 ATGGCGAAGGGTACGGATTCCAACGAGTTCATGATGCTTTCTAGGGTACGGACGGGTCTCAAGAGGGAATTTGCATTCGCCATGAAGGCCCAATCCGAGATCGGTGGCGGTTCCTTGGGCCGCACCCGTGCCAGTAAGAACCGGAATGTGCCTCCGGCTCAGCCCAGTCCCGCCAGAAAGCGCCAAAGGAAGTCATGTTCCGTGGAGGAAGAGGCGCCGGCGACGAAGAATGAGGATCAAGAGGAGGTTGATGGGTACACGGCAGCTGTGGCGGGTGTGGCGACAGCGAAGATTGATTCGGAGGAGGCTGGCGACGCCGTGAGCGAGGAGGAAGCGAAGAGCGACGTGGTGGATATCAACAGCGACGATGAGCCGAAGAATAATCAGGTTGGGGAATCATTGTTGGAGGAGAAGAAGATAGAGGAGGGAGAGGTTGACGAACCAAAGGGTGATGTGGTGCTGGAGACTGTGATCAATGAGGAACCCATCAATGAAGAAGAGCCTCGTGTGGTTGTGGATGAAATCGAGAATAAAGAGGAGCAAGTTTCTCCTGAGGATAAAAGTGCACCTTTGGAAAAACGTGCTTCTGGGGAACACGGTGCAGTTGGGATAACAACACCAGTTTTGGTTTGCAGTGACGATGATAAGGGGAAGAGAGTTGTAGCTGTGGAGAAGCCTATGAGGAGGTTTACTAGGTCGGTATTGAAGCAAAAAACTGAGAATACCAATATGGTGAATGATGGGGAAGGTGATGCTATTGTTGTTGTAGGTGTTGGAGCTGCTGATGATAATGTTCAGAATGAAACTGAGGCTGTGACTGAAACTGATGCTTCACCACAGTTCACAACTCCAACTCCAGCAAAGGGATCAAGGAGGGGCATGAAGAGGTTCCCTACCAAGCTGAAGGACCTTCTCGCCACCGGGATTCTTGAGGGACTGCAAGTGAAGTATGTCAGGGGATTGAAGGCACGGAGGCCTGGAGAAGCAGGGCTTCAAGGAGTCATTCGTGACTCGGGGGTTTTATGCTATTGTCCGGATTGTAAAGGGAACAAGGTTGTCACACCCACTGTGTTTGAGCTGCATGCTGGTAGTGCGAACAAACGACCTCCTGAGTATATGTACCTTGAGAATGGGAATACTCTCCGTGACATCATGAATGCATGCTGGAATTTTCCTTTGGACACCATGGAAGAAGCTGTCCAAAAGGTCCTTGGTGGTTTCACTTTGAAGAAGTCTAACATCTGTTTTAATTGCAGAGGTGGCAACGGTTCATCAAGACTACTACTATGTGATTTGTGCATGGAGTTGAAAGACACTCAACCTAGCCCTCGTCAAACAAAAAGTGTTGATCAAAATACTGTGACTAGCACTAAAAGTGTTGCCCAAACTCCTATGACTAGCACTAAAAGTGTTGCCCAAACTCCTGTGACTAGCACTAAAATTGTTGCCCAAACTCCTGTGACTGGCAGTAAAACTGTTTCTCAAACCACCATGACTAGCACTACAATTGTTTCATTTGCAGTTCAACCCAGATCACCAGAACCACAATCAGAACCAGAGCAAGTTGCAGTTCCAAAGTCCTTAAACAATGGAATGAAGCATAGCACATCTCATGGCAGGAGCCAGGGAAGAATTACTAGAAAGGACCTACGGTTGCATAAGTTGGTATTCGAGGAAGACGTGCTGGCAGATGGAACTGAACTAGCTTACTATGCTCATGGAGAGAAAAAGCTGGTAGGTTACAAGAAGGGATATGGAATTTTTTGTACCTGCTGCAAATCTGAGGTCAGTGCCTCTCAGTTTGAAGCCCATGCTGGCTTGGCATCTCGACGCAAGCCTTACTTGCACATATACACACCTGATGGAGTTTCACTTCATGATTTGTCCATCTCTTTATCAAAAGATCGGAGGTTCGCTATCAGTGAAAATGATGACCTCTGCAGCATTTGTGAAGATGGAGGGGATCTTTTGTGCTGTGATGGATGTCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGCATTCCAACTGGTACTTGGTATTGTAAATATTGTCAGAATCTTTATGGGGAGCATAATGTGAATGCGCAAGCAAAAGACCGAAGATGTGTACGTGTTGTCAAAACTAACAAGGTTGACCACGGTGGATGTGCCTTATGCAGACTCCACTATTTCAGTAAAAGTTTTGGTCCTCGGACAGTAATCATTTGTGACCAGTGTGAAAAAGAATATCACGTTGGGTGCTTGAAGGAACATAACATACAAAACCTTGAGGAATTACCTGAAGGGAATTGGTTTTGTGGTACAAGTTGTGGTCAAATTCATTCTGCTCTTGTGAATTTGGTGGCTAGTGGAGAGAATAGCCTCCCAGATTCCCTTTTAAGTTTGATTAAAAGGAAACATGAAGAGAAAGGTTTAGATGCTGGGGATGGTCTCGATATTAAATGGAGGCTTCTGAACTGGAAACGTGCTGCTTCTGTTGACACTAGAAAATTGCTTTCAAAGGCTGTTGCCATCTTCCATGAGAGGTTTGATCCTATAGTCGATTCTAATTCTGGCCGTGATTTTATTCCAACCATGCTATTTGGAAGGAACATCCGGGGTCAAGATTTTGGTGGAATGTACTGTGCGGTGCTTACTGTCAACCAAGTTGTTGTCTCTGCTGGCGTATTTCGTGTCTTTGGGCTAGAAGTAGCAGAGCTTCCACTAGTGGCAACAGTAGCAGATTTCCAAGGAAAGGGTTACTTTCAGTGCCTATTTTCTTGCATGGAGAGGCTGCTTGCATCTCTGAATGTGAAACACCTTGTTTTGCCCGCTGCTGAAGAAGCCGAATCAATATGGACAAGTAAATTTGGGTTTACAAAACTAGAACAAGAGGAGATAAACAACTATAAGAAATTTTATCGCATGATGATCTTTCAAGGGACTTCATTACTACATAAGCCGGTTCCTATGCCTGAACAGAACTAA 2973 0.4581 MAKGTDSNEFMMLSRVRTGLKREFAFAMKAQSEIGGGSLGRTRASKNRNVPPAQPSPARKRQRKSCSVEEEAPATKNEDQEEVDGYTAAVAGVATAKIDSEEAGDAVSEEEAKSDVVDINSDDEPKNNQVGESLLEEKKIEEGEVDEPKGDVVLETVINEEPINEEEPRVVVDEIENKEEQVSPEDKSAPLEKRASGEHGAVGITTPVLVCSDDDKGKRVVAVEKPMRRFTRSVLKQKTENTNMVNDGEGDAIVVVGVGAADDNVQNETEAVTETDASPQFTTPTPAKGSRRGMKRFPTKLKDLLATGILEGLQVKYVRGLKARRPGEAGLQGVIRDSGVLCYCPDCKGNKVVTPTVFELHAGSANKRPPEYMYLENGNTLRDIMNACWNFPLDTMEEAVQKVLGGFTLKKSNICFNCRGGNGSSRLLLCDLCMELKDTQPSPRQTKSVDQNTVTSTKSVAQTPMTSTKSVAQTPVTSTKIVAQTPVTGSKTVSQTTMTSTTIVSFAVQPRSPEPQSEPEQVAVPKSLNNGMKHSTSHGRSQGRITRKDLRLHKLVFEEDVLADGTELAYYAHGEKKLVGYKKGYGIFCTCCKSEVSASQFEAHAGLASRRKPYLHIYTPDGVSLHDLSISLSKDRRFAISENDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNLYGEHNVNAQAKDRRCVRVVKTNKVDHGGCALCRLHYFSKSFGPRTVIICDQCEKEYHVGCLKEHNIQNLEELPEGNWFCGTSCGQIHSALVNLVASGENSLPDSLLSLIKRKHEEKGLDAGDGLDIKWRLLNWKRAASVDTRKLLSKAVAIFHERFDPIVDSNSGRDFIPTMLFGRNIRGQDFGGMYCAVLTVNQVVVSAGVFRVFGLEVAELPLVATVADFQGKGYFQCLFSCMERLLASLNVKHLVLPAAEEAESIWTSKFGFTKLEQEEINNYKKFYRMMIFQGTSLLHKPVPMPEQN 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00580 990 MobiDBLite consensus disorder prediction 270 294 - -
Aip08g00580 990 MobiDBLite consensus disorder prediction 440 472 - -
Aip08g00580 990 SUPERFAMILY FYVE/PHD zinc finger 640 689 IPR011011 -
Aip08g00580 990 CDD PHD1_AIRE 646 686 - -
Aip08g00580 990 ProSitePatterns Zinc finger PHD-type signature. 647 686 IPR019786 -
Aip08g00580 990 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 869 963 IPR016181 -
Aip08g00580 990 MobiDBLite consensus disorder prediction 62 83 - -
Aip08g00580 990 PANTHER AUTOIMMUNE REGULATOR 1 983 - -
Aip08g00580 990 SMART PHD_3 717 772 IPR001965 -
Aip08g00580 990 SMART PHD_3 646 687 IPR001965 -
Aip08g00580 990 MobiDBLite consensus disorder prediction 176 198 - -
Aip08g00580 990 MobiDBLite consensus disorder prediction 508 539 - -
Aip08g00580 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 775 IPR013083 -
Aip08g00580 990 MobiDBLite consensus disorder prediction 31 136 - -
Aip08g00580 990 SUPERFAMILY FYVE/PHD zinc finger 715 769 IPR011011 -
Aip08g00580 990 MobiDBLite consensus disorder prediction 508 544 - -
Aip08g00580 990 Pfam PHD-finger 647 688 IPR019787 -
Aip08g00580 990 Pfam Tify domain binding domain 333 388 IPR032308 -
Aip08g00580 990 Pfam Tify domain binding domain 580 628 IPR032308 -
Aip08g00580 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 708 IPR013083 -
Aip08g00580 990 Gene3D - 814 982 - -
Aip08g00580 990 MobiDBLite consensus disorder prediction 107 122 - -
Aip08g00580 990 ProSiteProfiles Zinc finger PHD-type profile. 644 689 IPR019787 -
Aip08g00580 990 MobiDBLite consensus disorder prediction 270 287 - -
Aip08g00580 990 MobiDBLite consensus disorder prediction 176 194 - -
Aip08g00580 990 PANTHER AUTOIMMUNE REGULATOR 1 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00580 Aip-Chr8 5056683 5063591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00580 298 984 PHD Transcription Factor Family AT2G36720 45.592 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip08g00580 TDBD 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00580 - - gmx:100803825 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00580 08 5056683 5063591 Aip08g00580 08 5056683 5063591 ECH
Aip08g00580 08 5056683 5063591 Aip03g00274 03 2707827 2713617 PCT