Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00578 ATGATTTCAACAAGTATCGAACGAAATCAAGGGTTGATGATGCAGATGTTCCCTACTCCTCCTCCTCCTCCTGGGAGCGAGGATTTGGTGTCACAACAATCTATGGAAATAGTTAATAACTCTTCTGTTGCTTCTTCTTCTTCATCTACAGCTTCTTCTTCACACTCAAGCTCCCTTCTCTTCAATCTCTCTGTTCTCAAGGACAAGCTTAATCAGGTTCAGACCCTCGTTGGTGTTATTCTCTCCCCAGATCAGAACCTTCAGGACTCAACTACCTCCATGGCTGTTTCAAGCATGAACTCCACAATCCAAGAAATCATAGTTACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCGCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAGGTACCATTGCTACTACTGTTGCTTTCGCCAACAACCACCATGAATTGCACCAACAACATCAAAGGTTATTGATCAATAATAACAATAATAATATTAGAGGTCATGGCCATGGTTTCTTTTCTAGTACTACTGATTCTGAGGCACTGGATAATTGGCTAGGTGAAAGCTATAACAATACTGGTGTTGATTGTAAGGTTAATAATAATAACGATGATGATGATCCAAGTGTTGAAATTAGTGATACCAAAGAAGGAGCAAAGAAGTTGGATATAATTGAATTGGATGCTGAGGATTTGTTGGCGAAATACACACATTACTGCAGTGTTTGTGGGAAGGGGTTCAAGCGCGATGCGAATTTGAGGATGCACATGAGAGCTCATGGGGATGAATACAAAACGAGTGCCGCATTGAGTAACCCTTTGAAGCAGAACAATAACGAGAATGGTGATTGCTTGCCGAAGAAGTACTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACGCAAAGTTTCAGCCATTGAAGTCAATGATATGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCGAAGATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAATGGCAGTGTTCTTGTGGCACCACTTTCTCCAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTTGTTGGCCACCGAGCCCTTTCCATTGCCTTCCACCAATACAATAGTGCAGCTTAA 1185 0.4363 MISTSIERNQGLMMQMFPTPPPPPGSEDLVSQQSMEIVNNSSVASSSSSTASSSHSSSLLFNLSVLKDKLNQVQTLVGVILSPDQNLQDSTTSMAVSSMNSTIQEIIVTATSMMFTCQQIALAFPPPPPPPPPPGTIATTVAFANNHHELHQQHQRLLINNNNNNIRGHGHGFFSSTTDSEALDNWLGESYNNTGVDCKVNNNNDDDDPSVEISDTKEGAKKLDIIELDAEDLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKQNNNENGDCLPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHRALSIAFHQYNSAA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00578 394 SUPERFAMILY beta-beta-alpha zinc fingers 237 264 IPR036236 -
Aip08g00578 394 PANTHER OS08G0562300 PROTEIN 33 388 - -
Aip08g00578 394 ProSitePatterns Zinc finger C2H2 type domain signature. 241 261 IPR013087 -
Aip08g00578 394 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 33 388 IPR044300 GO:0010044|GO:0010447
Aip08g00578 394 Gene3D Classic Zinc Finger 326 376 - -
Aip08g00578 394 SMART c2h2final6 239 261 IPR013087 -
Aip08g00578 394 SMART c2h2final6 328 350 IPR013087 -
Aip08g00578 394 SMART c2h2final6 290 323 IPR013087 -
Aip08g00578 394 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 266 IPR013087 -
Aip08g00578 394 MobiDBLite consensus disorder prediction 10 29 - -
Aip08g00578 394 Gene3D Classic Zinc Finger 217 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00578 Aip-Chr8 5045674 5047977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00578 31 380 C2H2 Transcription Factor Family AT5G22890 47.309 2.27e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g00578 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00578 - - gmx:100802769 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00578 08 5045674 5047977 Aip08g00578 08 5045674 5047977 ECH
Aip08g00578 08 5045674 5047977 Aip03g00279 03 2724531 2725595 PCT