Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00577 ATGGAGATGGAATTAGGCATAGGCACGGAAGAGTTTCTTAACGATGCTTCCCACATCGCCAAGGGAAAGCGCACCAAGAGGCACAAACCCTTCTCCCCTTGCGACGTCGCCGCCATCACTTCCAGCTCCTCAAGCGCCAACGACTCTGCTTCCTTCTCTTCCACCACCACCTTTCAAGACGAAGAACAAGACATGGCTAACTGCTTGATTCTCCTTGCTCAAGGAAAAACAGGCGGAGAAGAAACCGATGATGATGAAGAAGATAACAAGATGAGAGAGAAGAGCAGAAGAATATCGGAGGTCACGACAACCGCAACTACAAAAATCGGTTTCTACATCTATGAATGCAAAACGTGCAACCGAACATTCCCTTCTTTTCAAGCTCTTGGAGGCCACAGGGCCAGCCATAAAAAGCCAAAGGTCACATCAGATGATAAAAAGAAACCGCAACCGCAACTACAACCACAACCACAACCAAATACTTTGGCGCTAATCACAAATTGCGACTTTGAAGAAACAAAGCAAGCACGTGTGATGACAACAAGCCCTCCAATTTCCCTTCAATTGGGATATGGTGGTGCTAGCAACAACAATAACGGCAAGCCCAAGATTCATGAGTGTTCAATTTGCGGTTCAGAATTCACATCTGGACAAGCTCTTGGTGGTCACATGAGGAGGCATAGGACAGCTGTCATCACTACTACTAGTCCTCAGCCAACTTGTGACTTACCTGCCACGCTGGAGGTCGTTAAGCGGCCGCGGAATCTTCTGGAATTGGATCTTAACCTTCCGGCGCCGGCCGACGACGACCACCACCACCGGGATTCCCAGTTTCAATTCTCGTCCACACAGAAAACCATGATGCTTTCTGCTGCACCGCCTTTGGTGGATTGTCATTATTAA 903 0.4828 MEMELGIGTEEFLNDASHIAKGKRTKRHKPFSPCDVAAITSSSSSANDSASFSSTTTFQDEEQDMANCLILLAQGKTGGEETDDDEEDNKMREKSRRISEVTTTATTKIGFYIYECKTCNRTFPSFQALGGHRASHKKPKVTSDDKKKPQPQLQPQPQPNTLALITNCDFEETKQARVMTTSPPISLQLGYGGASNNNNGKPKIHECSICGSEFTSGQALGGHMRRHRTAVITTTSPQPTCDLPATLEVVKRPRNLLELDLNLPAPADDDHHHRDSQFQFSSTQKTMMLSAAPPLVDCHY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00577 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 227 IPR013087 -
Aip08g00577 300 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Aip08g00577 300 PANTHER ZINC FINGER PROTEIN ZAT5 14 300 - -
Aip08g00577 300 Pfam C2H2-type zinc finger 114 139 - -
Aip08g00577 300 Pfam C2H2-type zinc finger 205 229 - -
Aip08g00577 300 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Aip08g00577 300 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 14 300 - -
Aip08g00577 300 SMART c2h2final6 205 227 IPR013087 -
Aip08g00577 300 SMART c2h2final6 114 136 IPR013087 -
Aip08g00577 300 MobiDBLite consensus disorder prediction 130 160 - -
Aip08g00577 300 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Aip08g00577 300 Gene3D Classic Zinc Finger 112 227 - -
Aip08g00577 300 SUPERFAMILY beta-beta-alpha zinc fingers 113 227 IPR036236 -
Aip08g00577 300 MobiDBLite consensus disorder prediction 74 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00577 Aip-Chr8 5029550 5030663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00577 5 300 C2H2 Transcription Factor Family AT2G28200 41.463 5.41e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip08g00577 zf-C2H2_6 4.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00577 - - aprc:113858527 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00577 08 5029550 5030663 Aip08g00577 08 5029550 5030663 ECH
Aip08g00577 08 5029550 5030663 Aip09g02755 09 126803185 126804896 ECH
Aip08g00577 08 5029550 5030663 Aip03g00281 03 2737167 2738541 ECH
Aip06g01832 06 51970736 51971904 Aip08g00577 08 5029550 5030663 ECH
Aip02g03305 02 109778426 109779307 Aip08g00577 08 5029550 5030663 ECH
Aip08g00577 08 5029550 5030663 Aip03g00281 03 2737167 2738541 PCT