Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00574 ATGGATGCTCACCAAGAAACACTGATATTCAACAATGATTATGAGGTGCATGATTTCACTGAGGACCCCAACTTTGATCAGCTCATCAATTTAATTAGAGGGGATAATAATAATGAAGATGATGCTGCTGTGTTCTTTAACTATGGTTCAGACATTATCATCAATGATTGCTTCCTTGATGATAATCAGAATCAGAATGATTTACTTCTTCCATGCCCTACTACTGCCCATAACCCATATGATCAGATTCATCAGAGCCATAACAACAATAGTAGCAATGAAGTGATGATGAATAATGTGTGTGATACTAATCTTATTAGCTCCTTCTCTTGCTTTGATGAAGGGGTGGTTAATAGAGAAAATGAAGGAGAGTATTCTTCTGCAACCACAACTGCAACTGATGAGGCTAATCTTAGTGGTAAACCAAGGGTGAAAGCTGATAGGTCCAAGACTCTCATCTCTGAGAGGAGGAGGAGAAGCAGAATGAAGGAGAAGCTTTATGCACTCCGCTCTTTGGTCCCTAACATAACAAAGATGGATAAGGCATCGATCATTGGAGATGCATTATCGTACGTGCATGAGCTTCAAGCACAAGCTAAGAAGCTCAAGGCTGAGGTTGCAGGACTTGAAGCATCTCTGTTTGTGTCAGAGAATTATAAAGCATCCTTTGATGACAATTACATAAAAACTGTTCAAGTCACACACAATAGCCACCCGATCAACAAGAAGATAGTGCAGATAGAGATGGTTCAAGTGGAAGAAAGAGGGTATTATGTGAAGATAGTGTGCAACAAAGGAGGAGGAGTTGCTGCATCACTCTACAGGGCTCTCGAGTCTCTTGTGGGTTTCAGTGTTCGGAATTCGAACTTTGAAACTGTTTGTGACACTATACTACTTACATTTACATTGAATGTTAAAGGCTTTGAACCAGAAGTTAACCTGCCAAACTTGAAGCTATGGGTGACAGGCGCTCTTCTCAACCAAGGCTTTGAATTCATGGGAAATTTTCATTATTGA 1017 0.4012 MDAHQETLIFNNDYEVHDFTEDPNFDQLINLIRGDNNNEDDAAVFFNYGSDIIINDCFLDDNQNQNDLLLPCPTTAHNPYDQIHQSHNNNSSNEVMMNNVCDTNLISSFSCFDEGVVNRENEGEYSSATTTATDEANLSGKPRVKADRSKTLISERRRRSRMKEKLYALRSLVPNITKMDKASIIGDALSYVHELQAQAKKLKAEVAGLEASLFVSENYKASFDDNYIKTVQVTHNSHPINKKIVQIEMVQVEERGYYVKIVCNKGGGVAASLYRALESLVGFSVRNSNFETVCDTILLTFTLNVKGFEPEVNLPNLKLWVTGALLNQGFEFMGNFHY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00574 338 Coils Coil 192 212 - -
Aip08g00574 338 MobiDBLite consensus disorder prediction 122 148 - -
Aip08g00574 338 MobiDBLite consensus disorder prediction 122 137 - -
Aip08g00574 338 Pfam Helix-loop-helix DNA-binding domain 153 196 IPR011598 GO:0046983
Aip08g00574 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Aip08g00574 338 SMART finulus 152 201 IPR011598 GO:0046983
Aip08g00574 338 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 334 - -
Aip08g00574 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 334 - -
Aip08g00574 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 215 IPR036638 GO:0046983
Aip08g00574 338 Gene3D - 140 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00574 Aip-Chr8 4994432 4996201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00574 12 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.848 2.42e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip08g00574 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00574 - - aip:107612257 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00574 08 4994432 4996201 Aip08g00574 08 4994432 4996201 ECH