Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00566 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGGCCATGGTCACCTGAAGAAGACACAAAGCTGAAAGAGTACATAGACAAGCATGGAACTGGTGGAAACTGGATCGCTCTTCCTCACAAAGCTGGTCTAAAGAGGTGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATTTGAGGCCTAACATTAAGCATGGTGAATTCTCAGACGAGGAAGACAGAATAATCTGCAGTCTTTATGCTAATATTGGAAGCAGATGGTCAATTATAGCAGCACAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGCTTTGCTTCCGAATAATAATAATAATAATAATCATCACTACTACTATTACAACACTACAACTACTACTACTCCACCAAGCATGTCTTTCACTACTGCTCCTCCTCCTTCAACTAGTACTAATTATTATAATTACAATACCACCATTGCAACATCACCAATAATGTCTAGTCTCCCTTTCTACCAAAACCAACAACAAGAGCAGCAGCAAGCATTGATGAGCCCCATGCAACAGTATTACCCTATGTTTGGGAGTGAAGGGAGTTGCAGTTCATCTGATGGGAGCTGTAGCCATGGTGGGAGGGAGATCAAGAAAGAAGAAATGGGGTTTCATCATCATCATCACATGTTTCATCATCATGAAGAGCAGCAGCAGCAGGCTATGGTGGTTGATCATGATGGTATTAATAATAATAACCAGTGGACAGAGAAGCTAGACAAGTGGCTGTTCCAAACGGCAAACCCATTGGACTATGATTTAGAGGTGATTAAACAACTTGTTATTAGCAATGATGGGTTGTTCAGTGTTGATGAAAACAAGACCGTACAAGAGAGCAAGCCCATCATCTACTCTGACTGA 933 0.4159 MGRAPCCDKANVKRGPWSPEEDTKLKEYIDKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLPNNNNNNNHHYYYYNTTTTTTPPSMSFTTAPPPSTSTNYYNYNTTIATSPIMSSLPFYQNQQQEQQQALMSPMQQYYPMFGSEGSCSSSDGSCSHGGREIKKEEMGFHHHHHMFHHHEEQQQQAMVVDHDGINNNNQWTEKLDKWLFQTANPLDYDLEVIKQLVISNDGLFSVDENKTVQESKPIIYSD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00566 310 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aip08g00566 310 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aip08g00566 310 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aip08g00566 310 PANTHER TRANSCRIPTION FACTOR RAX3 1 288 - -
Aip08g00566 310 CDD SANT 16 62 IPR001005 -
Aip08g00566 310 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aip08g00566 310 Gene3D - 7 68 - -
Aip08g00566 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aip08g00566 310 Gene3D - 70 140 - -
Aip08g00566 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip08g00566 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip08g00566 310 CDD SANT 70 111 IPR001005 -
Aip08g00566 310 SMART sant 13 64 IPR001005 -
Aip08g00566 310 SMART sant 67 115 IPR001005 -
Aip08g00566 310 PANTHER OS09G0431300 PROTEIN 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00566 Aip-Chr8 4875612 4879427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00566 1 119 MYB Transcription Factor Family AT5G57620 89.076 8.23e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip08g00566 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00566 K09422 - gmx:100796382 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00566 08 4875612 4879427 Aip08g00566 08 4875612 4879427 ECH
Aip08g00566 08 4875612 4879427 Aip03g00297 03 2875546 2876885 PCT