Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00565 ATGGTGTCCGACGCCAGCAAGAAAAAGGCCGCGCAGAAGAAGGCGGCGGCAGCGGCTAAGAGAGGAGGCAAGGCGGCTGCTTCCTCGAAGGCGTCGGCGTCAGCTTCAGCCTCGGAGAAGGCAGCCGACCAGCTCGCCAACGGTGTCGGAGATATTGTCATATCGGATCGGACCTGCACCGGTGTCCTCTGCTCACATCCCCTTTCCAGGGATATTAGGATAGAGTCTCTGTCAGTTACTTTCCATGGACATGATCTGATAGTTGATTCTGAATTGGAGCTGAACTATGGAAGACGCTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACCTTGCTTACGGCAATAGGTATGCGAGAGCTTCCTATTCCAGAACACATGGATATATATCACCTTGCTAGGGAAATTGAAGCCTCTGACATGTCTGCGCTGGAGGCTGTAATAAGCTGTGACGAGGAGAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTAGCCTCTCAGGATGATGGGGGTGGTGAAGCACTTGACCGTATATATGAACGTTTGGAAGCCCTGGATGCATCGACTGCAGAAAAACGTGCTGCTGAAATCCTATTTGGTCTTGGTTTCAACAAGCAAATGCAGGCAAAAAAGACACGTGATTTTTCCGGGGGCTGGAGAATGAGGATTGCTCTAGCCAGAGCTTTATTCATGAACCCAACCATTCTCTTGCTTGATGAACCAACCAATCACCTCGATTTGGAAGCCTGTGTGTGGCTGGAGGAGAATCTTAAGAAGTTTGAGCGTATTCTGGTTGTGATTTCACACTCCCAGGATTTTCTTAATGGTGTCTGCACAAATATCATACACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAACTATGATCAGTATGTTCAGACACGTTCTGAACTTGAAGAGAACCAGATGAAGCAGTACAAATGGGAACAGGACCAGATTGCCTCAATGAAGGAATACATTGCCCGATTTGGCCATGGGTCAGCAAAACTAGCTCGACAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGTCTTACAGAGAAGGTGGCTAGGGACAAAGTTTTGGTATTCCGCTTTGTGGATGTGGGAAAACTTCCCCCTCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCTGAGACTCTCATATACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACATTACTTAAGTTAATGACAGGTGAACTGGTTCCCATAGATGGCATGGTTCGACGCCATAATCATCTTCGGATTGCACAATATCACCAGCACTTGGCCGAAAAGCTAGACATGGAAATGTCAGCTCTCCAGTATATGATTAAAGAATACCCTGGAAATGAGGAAGAGAAGATGAGAGCTGCTATTGGGAAGTTTGGCCTATCGGGTAAAGCCCAGGTGATGCCCATGAAGAATTTATCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCCTATAGGCAACCTCACTTGCTACTCTTGGATGAGCCAACCAATCATTTGGATATTGAGACAATCGACTCGTTGGCCGAGGCATTGAACGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCAGACCAATGTGTCACCAGATGGGAAGGTGATATTATGGATTTCAAGCAGCATCTAAAGGCGAAAGCAGGTTTATCTGACTGA 1797 0.4691 MVSDASKKKAAQKKAAAAAKRGGKAAASSKASASASASEKAADQLANGVGDIVISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIYHLAREIEASDMSALEAVISCDEERLRLEKEAEALASQDDGGGEALDRIYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPETLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELVPIDGMVRRHNHLRIAQYHQHLAEKLDMEMSALQYMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQCVTRWEGDIMDFKQHLKAKAGLSD 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00565 598 MobiDBLite consensus disorder prediction 1 35 - -
Aip08g00565 598 CDD ABCF_EF-3 383 574 - -
Aip08g00565 598 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524
Aip08g00565 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 598 IPR003439 GO:0005524
Aip08g00565 598 Pfam ABC transporter 90 244 IPR003439 GO:0005524
Aip08g00565 598 Pfam ABC transporter 399 530 IPR003439 GO:0005524
Aip08g00565 598 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 598 - -
Aip08g00565 598 CDD ABCF_EF-3 72 289 - -
Aip08g00565 598 Coils Coil 290 310 - -
Aip08g00565 598 Gene3D - 72 336 IPR027417 -
Aip08g00565 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 312 IPR003439 GO:0005524
Aip08g00565 598 SMART AAA_5 408 596 IPR003593 -
Aip08g00565 598 SMART AAA_5 96 298 IPR003593 -
Aip08g00565 598 PANTHER - 1 598 - -
Aip08g00565 598 Pfam ABC transporter 283 361 IPR032781 -
Aip08g00565 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 318 IPR027417 -
Aip08g00565 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 577 IPR027417 -
Aip08g00565 598 Gene3D - 347 596 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00565 Aip-Chr8 4848532 4852528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00565 383 573 Calmodulin-binding Proteins AT2G36910 24.887 1.19e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00565 K06185 - gmx:100785099 1059.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00565 08 4848532 4852528 Aip08g00565 08 4848532 4852528 ECH
Aip08g00565 08 4848532 4852528 Aip03g00302 03 2912135 2916476 PCT