Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00556 ATGTCCTCCTTGAGTGGGGATGATGAGGACGACCCCATCGACAACGACTCCGATGCGACTGAGATGGGTGATGACCCCCACGCGAGTGGCGTCAGCTCGGATCCAGAGACATGTCTGGGTGATGCTCCCTGTTTTAGGTCAACAGAGGATTTCGTAGACAAGGTGTTTAGTACCGAGGAAGATGCATATGCGGCATACAAACAGTTTGCCCGCCTAAGGGGGTTTGGTGTAAGGAAGGGTGACGTGGCTCGAATAAATGGTGTTTTGGTCAGACGAGACTTTTTTTGTAATCGTCAAGGTACAAGGCATGAGAAATACTACGATCATCCAGAAAGAGTATGGGAGGAGAGGCTGGAGAGCCGCACAGGTTGTTTAGCAAAGTTGAAAATCTACTATGATTTGCAAGACCAAGTTTGA 417 0.4892 MSSLSGDDEDDPIDNDSDATEMGDDPHASGVSSDPETCLGDAPCFRSTEDFVDKVFSTEEDAYAAYKQFARLRGFGVRKGDVARINGVLVRRDFFCNRQGTRHEKYYDHPERVWEERLESRTGCLAKLKIYYDLQDQV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00556 138 Pfam FAR1 DNA-binding domain 66 132 IPR004330 -
Aip08g00556 138 MobiDBLite consensus disorder prediction 1 38 - -
Aip08g00556 138 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 14 131 IPR031052 GO:0006355
Aip08g00556 138 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 14 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00556 Aip-Chr8 4759752 4760168 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip08g00556 FAR1 7.3e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00556 - K17604 ahf:112717862 216.853