Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00554 ATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTAATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTCATTGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGAAAATTGATATTGGTGTTCCTGATGAGGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTTGATTTAGAGAGGATTTCTAAAGACACACACGGTTATGTTGGTGCAGACCTTGCTGCCCTTTGCATTGAAGCTGCTTTGCAATGCATTAGAGAGAAGATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCTGAAATACTGAATTATATGGCAGTTACAAATAAGCATTTCCAGACCGCTCTTGGAACGAGCAACCCATCTGCTTTGCGTGAAACTGTTGTTGAAGTTCCTAATATTAGTTGGGAGGACATTGGAGGCCTTGAGAATGTCAAGCGTGAGCTGCAAGAGACTGTTCAGTATCCTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGCATGTCACCATCTAAAGGAGTCCTCTTCTATGGTCCTCCAGGATGTGGAAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTTAA 852 0.419 MAQIRELVELPLRHPQLFKSIGVKPPKGESESNLRKAFEEAEKNAPSIIFINEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDRKIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCIEAALQCIREKMDVIDLEDETIDAEILNYMAVTNKHFQTALGTSNPSALRETVVEVPNISWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00554 283 Gene3D - 212 283 IPR027417 -
Aip08g00554 283 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 28 - -
Aip08g00554 283 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 28 283 - -
Aip08g00554 283 Pfam ATPase family associated with various cellular activities (AAA) 28 118 IPR003959 GO:0005524|GO:0016887
Aip08g00554 283 Pfam ATPase family associated with various cellular activities (AAA) 262 283 IPR003959 GO:0005524|GO:0016887
Aip08g00554 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 210 IPR027417 -
Aip08g00554 283 Pfam AAA+ lid domain 141 183 IPR041569 -
Aip08g00554 283 Gene3D - 27 119 IPR027417 -
Aip08g00554 283 CDD AAA 228 283 - -
Aip08g00554 283 CDD AAA 31 118 - -
Aip08g00554 283 PANTHER AAA-FAMILY ATPASE 1 28 - -
Aip08g00554 283 PANTHER AAA-FAMILY ATPASE 28 283 - -
Aip08g00554 283 Gene3D - 120 211 - -
Aip08g00554 283 ProSitePatterns AAA-protein family signature. 89 107 IPR003960 GO:0005524|GO:0016887
Aip08g00554 283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00554 Aip-Chr8 4709055 4710376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00554 193 282 Calmodulin-binding Proteins AT3G56690 44.444 6.19e-24 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00554 K13525 - gmx:547850 530.791