Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00540 ATGAGTGGCTTAAGGCCTGATCATCAGTCTCCTCATCATGTAGCACAGCAAATTCGGCGTGATAAATTGAGAGTCCAGAACATTTCTCACCATCCACAATCACAGGATTTCCCCAACAATTTGGAACAATTCAACTTGGATCTTCTTCAAGTAAGGAATGTTAGAAATGCACACAACATGCTTGATGATGAGCCTCACCCACCACCACCAGGTGTTTATTCATCACAAGTGTCCAATTTCTTATCAACGCCTTTGAACCCTTTGGAGTATCACGAACTAGCTACTGTTGCAGCAGCTGAACAACCTAGTAGTAGTTGCAGTAGGGTAATGATGCATCAAAGTGAACTGCGCAGTTTGGGGAATTGGAGAAGCAGTGCTAACAGTAATCAAGGGTGTGATTGGTTTGTAAATTATGCATCAGGAAGCAGTTCTATGGCTAATAATGAAAGCAATAATCCCAACACTACTACTCATTTGGCTACTGAGATGAATAATGTGTCTTATAACCAGCACTATGAGAAGCCTAGTTGTTACAATGAATTCACAGATGTAATTGCTAATAGAGAAATTCAGAAGCAATTGGGAGGAGGAGTACTTCATCATCCTTCTTCTTCATCATCGATGTCGCCTTTTTATCAGAATACTTTGCAGGATATTGTCAAGTCCGCTTCTATAAGTGCGCAAGGATCAGACAACATGGCCTCATTGATGCAGCAACCTGGCCATGGAATTTGGGTTGGAGATGGTAGTGGACTTGACCTTCATCCAAGCTATGGAAACCAACCGAATCAATTTCGTTGCGCCGGTGGTAATCCTTGGACGAATCGAACAGTTGACAACGCCCTTCGATGGAATAGTAGTCCACTTGGTTTCATAGACAAGAAGGATGATGAACACTCTGGACGACCTCTAATGAGCAATTCGAATCCTCAGAACTTGTCTTTATCACTGTCATCAAATTCACAATCAAAGACTTCTGTGTCTCAATTTGAGCAAGTGTCTGCATCTGATGATCTTCAATGTAAGGATCCTCAGTACATGAAGTATGTAAGAGCTTTCATGAAGCCATCTATAGTTTCAAGAGATTCTGGGAAATCACCTCAAGATCCAGTGGGGGTGCCTTCAAGCACTAGCTATAGGAATGTAGGTCCCCTTGGCCCTTTCACTGGTTATGCTACTATTCTCAAGAGCTCAAGGTTCTTGAAATCAGCACAACAGTTATTGGATGAGTTCTGCCGTATATCTAGTCCAAGATTTTCAAAATCACGTGATGTCACACAAAGGTTATCTGGAGAAGCTAGTGCTTCTACTTCTACTGATGTTATCACTGTCGATAATCAAACTGAGGCTGCAGCAAAAGAAGGTAGCAATTCAGGTTCTTCATCTTCTATGTTCCATGGTGCAAATGAGAATAAAGCAGATTGGGGAACCGGGAGTGGTTCTTGTCTATCTCCTCGGCCAGATTACCAACAAAAGAAGGCAAGGCTCCTTTTCATGCAAGAGGAGGTTACAAGGAGATACAGGCAGTACCATCAACAAATGCAGATGGTTGTTTCATCCTTTGAGTCAGTAGCAGGTCTTAGTTCCGCCACTCCTTACATCTCCTTGGCTCTTAAGTCGGTATCGAGGCACTTCAAGTGCCTCAAAAATTCCATCTCAGATCAGCTCAAACATATAAGTGAAGTGTTGGGAGAGGATTTCTCAGTACCAAGAACCAGTACTTGTGGTAAAGATGACACCGCTAGCATGGGAAGATTAAGTTGCATGGACCAAAGCTTTCAAAAGAACAAATCTGGGAGGGGTGGCACCGGCCTTGTTGAACCCCAGCAACATGTCTGGAGGCCCCAAAGAGGCTTGCCGGAACATTCTGTGGCAATTCTCAAAGCATGGTTATTTGAGCATTTTCTTCACCCTTACCCCACAGACACTGATAAACACATGTTGGCAACACAAACAGGTCTTTCACGAAACCAGGTGTCGAATTGGTTCATCAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGGCACAACAGGTGCCAACAAGAACAACAACAATCACCCTGGTACTGAAAATGAGAGAGCTTGTGTTAATGAAGATGGTTCCAGCAGCCAACAGCATAGAGTAATGGAGGGGACTCAAAGCAAGTTCGACATGCATTCTTTGATTCCTGAGAACCAACAGCAGTCTCACGAGTGTATGGAACTTGAAATGGAGTCAACAACCAATGAAGAACAATGGAGCCAAGAGAAGAGGTCTAAATTGGAATGTGAGATGAGTTCAACAAGCATGGATGAAGGGTCACTCATGATGGGTTTTATGCCATATAGCAGGCGTGATCATCAGGTTGGTGGGCTTGGATCTGTGTCACTAACATTGGGTCTAAGGCATGGTGTTGAAGCTGTTGTGCAAAACCAACAGCAACAACAACAGTTACAAGAGGAGCAGCTTAGGCGTCACTTTGGAGGACACATGATCCATGATTTTGTGGGCTGA 2523 0.4356 MSGLRPDHQSPHHVAQQIRRDKLRVQNISHHPQSQDFPNNLEQFNLDLLQVRNVRNAHNMLDDEPHPPPPGVYSSQVSNFLSTPLNPLEYHELATVAAAEQPSSSCSRVMMHQSELRSLGNWRSSANSNQGCDWFVNYASGSSSMANNESNNPNTTTHLATEMNNVSYNQHYEKPSCYNEFTDVIANREIQKQLGGGVLHHPSSSSSMSPFYQNTLQDIVKSASISAQGSDNMASLMQQPGHGIWVGDGSGLDLHPSYGNQPNQFRCAGGNPWTNRTVDNALRWNSSPLGFIDKKDDEHSGRPLMSNSNPQNLSLSLSSNSQSKTSVSQFEQVSASDDLQCKDPQYMKYVRAFMKPSIVSRDSGKSPQDPVGVPSSTSYRNVGPLGPFTGYATILKSSRFLKSAQQLLDEFCRISSPRFSKSRDVTQRLSGEASASTSTDVITVDNQTEAAAKEGSNSGSSSSMFHGANENKADWGTGSGSCLSPRPDYQQKKARLLFMQEEVTRRYRQYHQQMQMVVSSFESVAGLSSATPYISLALKSVSRHFKCLKNSISDQLKHISEVLGEDFSVPRTSTCGKDDTASMGRLSCMDQSFQKNKSGRGGTGLVEPQQHVWRPQRGLPEHSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGTTGANKNNNNHPGTENERACVNEDGSSSQQHRVMEGTQSKFDMHSLIPENQQQSHECMELEMESTTNEEQWSQEKRSKLECEMSSTSMDEGSLMMGFMPYSRRDHQVGGLGSVSLTLGLRHGVEAVVQNQQQQQQLQEEQLRRHFGGHMIHDFVG 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00540 840 SUPERFAMILY Homeodomain-like 614 680 IPR009057 -
Aip08g00540 840 MobiDBLite consensus disorder prediction 303 320 - -
Aip08g00540 840 MobiDBLite consensus disorder prediction 449 469 - -
Aip08g00540 840 Pfam Homeobox KN domain 630 669 IPR008422 GO:0003677|GO:0006355
Aip08g00540 840 Pfam Associated with HOX 394 553 IPR006563 -
Aip08g00540 840 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 66 808 - -
Aip08g00540 840 MobiDBLite consensus disorder prediction 359 378 - -
Aip08g00540 840 SMART prehox3 389 554 IPR006563 -
Aip08g00540 840 MobiDBLite consensus disorder prediction 293 320 - -
Aip08g00540 840 MobiDBLite consensus disorder prediction 361 378 - -
Aip08g00540 840 CDD homeodomain 613 674 IPR001356 GO:0003677
Aip08g00540 840 Gene3D - 616 678 - -
Aip08g00540 840 ProSiteProfiles 'Homeobox' domain profile. 610 673 IPR001356 GO:0003677
Aip08g00540 840 SMART HOX_1 613 677 IPR001356 GO:0003677
Aip08g00540 840 MobiDBLite consensus disorder prediction 685 715 - -
Aip08g00540 840 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00540 Aip-Chr8 4512976 4518924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00540 484 682 Homeobox Transcription Factor Family AT4G34610 54.774 2.72e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aip08g00540 POX 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00540 - - adu:107461750 1604.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00540 08 4512976 4518924 Aip08g00540 08 4512976 4518924 ECH
Aip08g00540 08 4512976 4518924 Aip03g00322 03 3073915 3083443 PCT