Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00538 ATGGCAAATAGTACATGTTCTAGCTCAGGTTCAATGGATTCAAACCAGAAGCCAATAAAAGAAAAGAGTGTGAAACAATTGACATTTGAAGCTAAGGAAGTCAATGACAATGAGGAGCACGATTTGGGAACTTCACACTTAGAAACAAAGAGAATGGATGCTCGTTGGTACCGGTCTCTGTTTCGAAAACCAAAAAATGGTAAGGTTGAGGTGCCTCAAAGGGTTCAACCTGATATCTTTAGAAACGAGACAGCACAAATGCCAGAGTCAAGGAATCCATTACTGGATGAAGATTTAGTTAGGAACGATGTTGGGCATGATGGAGAAAAATCGACTCATTCTAAGAGAAATGGAATCATGTTGGACACGGGTTCAGATCTTTCTACCACATTGGCTGATGATGATGATTGCAACCTCATCCCTTCAAGGTTGCGTGACAATATTGTAGGGACTGGTGGGTCATGTTCCAAACGGAGAAGGTTGGATTGTGATCCTGTGGTCTCATCTAACCCTTCTACAACTGAGCTTCAGGATGGAGTTGATACTGATGCAAGTGTGTTGCAAAAGGAATATCCTGTAAATTCACCAAAAGAAGTCACAAAGCACACATGTCTAATTTGCAAGAGTGGTGGACAGCTACTGTTTTGTGGTGGAAAAGGATGCAGCGGGTGCTACCATTCTTCTTGTCTTGAGCCACCCCTGGTCGATGCCTCCATTGGAGTTTGGTATTGCCATTTCTGTGTGAGGAAGAAGATTGAACTTGGTGTATATTCTGTATCGGAGGGAGTAGAATCAATTTGGGATGTCAAAGAAGTTTTGACATCAAATTTTGATGGGTCTACTCTTGCTCAGAAAGAATATCTAGTGAAATATAAAGGCATTGCTCATGTTCATAATCGATGGATACCGGAAAATCAGTTACTTCGTGAAGCTCCTTCACTTCTTAAAAACTTTAATATGAAAAATCAGGACCAAAGGTTGAAGCTAGAATGGAGTCTACCTCATCGTCTGCTGCAGAAGAGAGCAATAATCCATTCCACACAGCAAGATGATCACAACATTAATGATGGAGTTCAAAACTTAAACTGTTGCTACGAATGGCTTGTGAAATGGCGTGGTCTTGGTTATGAGCATGCTACATGGGAGTTGGACAATGAGTTGTTTCTTCGTTCACCTGAAGGTCAGAGGTTAATCAGAGGCTATGAAGAATGTTTCCAGAGAGAAAAGAGAGCAGCTTCTTGCTCCAGAGTAGATAATGTGCCACAGTATTGTTTTCTAATACCTGATTCTGGTAACAAGATTGATCAACTCAAGGAGCGGCCGTCAAGTCATCTTGCATATAAATGCAAGTCGGACTCTTTCAAGTTTATTGAGTATTGGGTTCCTGTCCAGATATCTCATGTGCAGCTTGAGCAGTATTGTGCTACTTTACATTCAAATGCTTCAATTCTGCGTTCATCAGCAAAGACGGATATCGATGCCCTTCGTGACATCATTATTACGGCCCGAAAGTGTTGTATTCATCCTTCTATTGTTGATCAAACACTGAAAAGTCGACTTACTGTTGGCCTTGATGAGGCTGAATTCATCGATGTTGATATAAAAGCAAGTGGCAAGCTGCAACTACTTGATTCGATGCTCATGGAGTTGAAGGCTAAAAGCTTAAGGGGTCTGATTCTTTTTAAGTCTATTGGTGGTTCTGGGAGGGTTTCTGCAGGAGATTTTTTGGATGACTTGTTACGGATAAGATTTGGTCCAAACTCGTATGAACGGGTTGACAAAGGTCTTTTAGTGTCCAAGCAGAAAGATGCCATGAGGAAATTTAACAACAAGGATGATGGACGGTTTGTTTTTCTGTTAGATGCATGTGCCTGCCGTCCAGGCATCAGATTATCATCACTGGATACCATTATTATATTTGACAGTGATTGGAACCCAACTAATGATATAAGATCCCTTCAGAAGATAACAATTGATTCACAGCCCCAAGTGATAAAAATATTCCGCTTATATTCAGCCTTCACTGTGGAAGAAAATGCCTTGATCCTTTCAAAGCAAGATAGGATACTTGACAGCAATTTACTGAACATAAGCAGGACTACCTGCCAAATGCTGTTGATGTGGGGAGCTGCTTCCCTATTTGATGATTTGAAAATTTTCCATCACAGTGAAACTTCTGTTTTGGGTCAGAAATCTTCATCTGGGCAACAACATCTGACAGAAACAGTCCGTGAATTATCATCAGTACTATCTCAGGACGCTGAAACAAGAAACTGTTCAGTTTTATTAAAAGTCAGGCAAAATGGGTCAACATACCAGGCAGATTTTCCTTTGCCTGGTGAGATGAAAAATAAGATACTGGAGGAAGAGCTTCCCCATATTTTTTGGACAAAACTTTTTGAGGGGAAACAGTTTAAGTGGAAGTACTCTTGTAGTTCATCTCAGCGGAGCCGAAAGAGAGTAGATCTTTTTGATGGTAGTGGAGGTATAGCGAAAAAGCGCCGGAAAGTGAGAAACAATCTTGTGGACCAGCCTTCTTCAAAATCTGAAGGTTCAAAGTTATCTACTGGGATCAAGACAGATAGACTTGGATTTGATGATGTCGAATATGAGGAAACAACTAGACTGCGTGATGAGCAGAGGAGCTTATATCTTTCTTTGAAGCCAGAGATCAAAAAGCTTTGTGGCGTTCTTCTTCTCCCTATTTGGACTGTTGCTCCATTGCTAAAGCACAAAGTTGACCACAGGGATTCTCTTTTACTTGCAAAACAGCATTTGGATTTTGTCTGTAGGAAAGAAGAGGTGGATTATATCTACTCAGTTTTACGCTGTCTGAAGGGACTTTTTTTACATCGGATGGGAAATTCAAAGGATACTGGTTCTCCAAAATCTCCTGAGTCATCAAGGAAGGTTTATTCCAGTAAAGAAGTAGGGCAGGAGGCTGACTTGTTTAAAAATGATGTGTTCAGAAGTATTAGGGAAATACGGAAGAAGTGCCAAGAGCAGTTGAAGAAACTTAAACGGATGCAACAAGAAGAGAAGCAAAGATTAGAAACAGCTTTTGAGGATGAAAAGGCTGAATTTGAGAAAAAGTACAAAATAGAGTCATTGGTTATTCGGACCTGCTCTCCAAATGATGTGATGAAGACAGAGAAGCTCAAAGTCTTGAACACTGAATTTGGTTCAAAAATTGAAGAACTAAAATGTGAGCATGAAACACGTCTAAAGGCTCTTGAGGACACACATATGGCTGCTAGGCAGAACTTCAAACATAGAGAAGACGCATGGGCACAAGATGTAGAGGATTGGGCAAAAAGTGAATTGTCAAACATAGATGCTTCAAAGGAACTTGGTACGGCAGTTGAATACACGCAGCTGTCTGATCAGGAAAATGCTCACAAGGGTTCAGAGAGTATGCCCCTTGTGTCTGATCATTTGACTGACGAGAAGGGTCATGATAATAACACAAATGAGGCCATGCCTAATGATGTTCAGGATGAAGTTCATTCTTCTACACACAATAAACTAGATGGGACTGTTTCAAGCCTGTCTTGTGAGAATGCCGTGCAAATCCATGGAGCTTATAATGGTTTGGATAATGCTACCACTGAAACTTCACATTTACCTAATGAAGGGATTGCTGATGAGGCCATGGCAGGCATACTGAATAGAGATGCACCCAGACAGCCTACCACTGTCACTGCTACTGATTGTCTGGAAAATGTTTCAGCTGATAGTCCTCCTCCATCTGTGGAGCAAGTAACTGATGGAGTTGCTTTAAATGAAATTTTAGATAGATGTGCTACCCCAGAAACTAGCCACGATCAGGGCAGAGTAAGCATATTGGGACGAGAGGTACCTGTGGAAGTGGAAACACATAGGATGGTCAATTTTAGTGAATGTCCCATAAATGCTGCTGCTGTCAATCATTTCTCATCGGTGGATCAAACATCTGACAAAGGACCTATAAATGACCCAGATAATACTGTCTCATCATTCAGGTGTTGTCAAGCTGATGGTCCTGATAAAAGTTCCCTTTCAAATCCACCTTTGGTACAACAAGTTACTGATGTAGTCTCTTTGAATGAACCTGATGGAGATACTCATGAAGCAGCTGATTGTCATAATGATACAAGGCCTTCCACAGACACTTCTTCAGTGGATAAAAGTAGTATGATACCAGCCCAGCTGGAAGGAGTGCAGCAATCACCATCTCTGGAGGCCCCTCCTGCTCAGGATACTGCTGGAGAAGTGCAGAATTCTTCTGAACGAGCTGAGATAGTACCTAATCTAGTTGGTGTTGTTCCAGCTAATCAATCAAATTCATGCATCCTGGAGCCTTCCGAGAATGGAGTTGAACATCAGCCGAACAGAAATGATCTCCCCCACCACGAAACAGAGGTTTCAGCTGTGGTTCCTAATCAGGATGTTGTGCAGGCTGACTCAAATTTAGAGCTTGGTTCACACTCGCAAGCAGTTGTGCACTCTGTCCTAAATTCAGGCCATGATTCACTTGGCCCTGTTGGAGTCAGAAGAGAGGCTTCAAGTTCAAGCTTGAGAAATTTGTCAACTCCTTCAGAAATCAACAATCATCCTATACATACTGCAACTCATTCAGCTTCTAGAATGCCTCTGCCGTTGAGCGCCGATCCACTTAAAAATGAATTGGAAAGAATAAAAAAAATTATTGAACAACTGACCAAAAACCATGAAGAAATGAGAGCTAAACTGAAGTCTGATTTCGAAAAGGAATTGGAGGCACTTCGTAGGAAGTATGATATTAAATTTCAATTGGTTGAGAATGAATTTCAACAAACGAAGAACAAGTTGGATTCAAGTTACCACACAGTTTTGGTAAATAAGATGTTGGCAGATTTTTTTCGGTCCAAATGCATGTATCGTAAAACATCTGATGCATATGGAGTGCAGCAAGATGCAGGTGTTGCCCAGCAGTCGATTCAGCTTGCAAGACAACAAAGTGCTACTTTTCCTTCCCAGGTTGTTGCTGGTTCATCTTCCCGGGGACCACGGGGACCACTTTCTGCCAATCTTCATAGTCCATCTGCTTTGGTTAGCTCTCAGAATTCGCTCCCACCTTCAAATGTTACGTACAAGACACCAAGTCCTCCTGCAAGACTTCCTCTTAACTGCAATTCTTCACCCTCAGGGAATTTTCCGATTGCCAGTGAGATGCGAGCCCCGGCACCACATCTCCAGCCTTTTAGACCCTCGGCACCTATGCCGGCTCCTAATCACCCTGCTCTCCTTCATGGGATGCCAAATCAGGCTGCACCTGCGATTGCTCCCACATTGTCTTGTGTTCCAGCCCAACCAACTCCACTGACATATCAGTCTGATCCTCAGATGGCCCACCAGCCGAATAGCTCTGTTGGAACTGGTGGGTTTTCCACCCTCAACTTACGGACCATCAGCTTACATGCGAATGCCAACACTCAATCTGCTGTTTGTCTTCCAAGAGTTCAGCCAAGTATGTCAGAAGTGGTTTCTTTGAACCCACCCAGAATTGGCACCAGTGTTAGTGTGACTCCTAACTCATCCAGTCAAGCTGCATCTCTTGAATTCGTCTGTTTATCAGACGATGAGTGA 5607 0.4223 MANSTCSSSGSMDSNQKPIKEKSVKQLTFEAKEVNDNEEHDLGTSHLETKRMDARWYRSLFRKPKNGKVEVPQRVQPDIFRNETAQMPESRNPLLDEDLVRNDVGHDGEKSTHSKRNGIMLDTGSDLSTTLADDDDCNLIPSRLRDNIVGTGGSCSKRRRLDCDPVVSSNPSTTELQDGVDTDASVLQKEYPVNSPKEVTKHTCLICKSGGQLLFCGGKGCSGCYHSSCLEPPLVDASIGVWYCHFCVRKKIELGVYSVSEGVESIWDVKEVLTSNFDGSTLAQKEYLVKYKGIAHVHNRWIPENQLLREAPSLLKNFNMKNQDQRLKLEWSLPHRLLQKRAIIHSTQQDDHNINDGVQNLNCCYEWLVKWRGLGYEHATWELDNELFLRSPEGQRLIRGYEECFQREKRAASCSRVDNVPQYCFLIPDSGNKIDQLKERPSSHLAYKCKSDSFKFIEYWVPVQISHVQLEQYCATLHSNASILRSSAKTDIDALRDIIITARKCCIHPSIVDQTLKSRLTVGLDEAEFIDVDIKASGKLQLLDSMLMELKAKSLRGLILFKSIGGSGRVSAGDFLDDLLRIRFGPNSYERVDKGLLVSKQKDAMRKFNNKDDGRFVFLLDACACRPGIRLSSLDTIIIFDSDWNPTNDIRSLQKITIDSQPQVIKIFRLYSAFTVEENALILSKQDRILDSNLLNISRTTCQMLLMWGAASLFDDLKIFHHSETSVLGQKSSSGQQHLTETVRELSSVLSQDAETRNCSVLLKVRQNGSTYQADFPLPGEMKNKILEEELPHIFWTKLFEGKQFKWKYSCSSSQRSRKRVDLFDGSGGIAKKRRKVRNNLVDQPSSKSEGSKLSTGIKTDRLGFDDVEYEETTRLRDEQRSLYLSLKPEIKKLCGVLLLPIWTVAPLLKHKVDHRDSLLLAKQHLDFVCRKEEVDYIYSVLRCLKGLFLHRMGNSKDTGSPKSPESSRKVYSSKEVGQEADLFKNDVFRSIREIRKKCQEQLKKLKRMQQEEKQRLETAFEDEKAEFEKKYKIESLVIRTCSPNDVMKTEKLKVLNTEFGSKIEELKCEHETRLKALEDTHMAARQNFKHREDAWAQDVEDWAKSELSNIDASKELGTAVEYTQLSDQENAHKGSESMPLVSDHLTDEKGHDNNTNEAMPNDVQDEVHSSTHNKLDGTVSSLSCENAVQIHGAYNGLDNATTETSHLPNEGIADEAMAGILNRDAPRQPTTVTATDCLENVSADSPPPSVEQVTDGVALNEILDRCATPETSHDQGRVSILGREVPVEVETHRMVNFSECPINAAAVNHFSSVDQTSDKGPINDPDNTVSSFRCCQADGPDKSSLSNPPLVQQVTDVVSLNEPDGDTHEAADCHNDTRPSTDTSSVDKSSMIPAQLEGVQQSPSLEAPPAQDTAGEVQNSSERAEIVPNLVGVVPANQSNSCILEPSENGVEHQPNRNDLPHHETEVSAVVPNQDVVQADSNLELGSHSQAVVHSVLNSGHDSLGPVGVRREASSSSLRNLSTPSEINNHPIHTATHSASRMPLPLSADPLKNELERIKKIIEQLTKNHEEMRAKLKSDFEKELEALRRKYDIKFQLVENEFQQTKNKLDSSYHTVLVNKMLADFFRSKCMYRKTSDAYGVQQDAGVAQQSIQLARQQSATFPSQVVAGSSSRGPRGPLSANLHSPSALVSSQNSLPPSNVTYKTPSPPARLPLNCNSSPSGNFPIASEMRAPAPHLQPFRPSAPMPAPNHPALLHGMPNQAAPAIAPTLSCVPAQPTPLTYQSDPQMAHQPNSSVGTGGFSTLNLRTISLHANANTQSAVCLPRVQPSMSEVVSLNPPRIGTSVSVTPNSSSQAASLEFVCLSDDE 1868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00538 1868 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 706 IPR001650 -
Aip08g00538 1868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 254 IPR013083 -
Aip08g00538 1868 Pfam Chromo (CHRromatin Organisation MOdifier) domain 267 319 IPR023780 -
Aip08g00538 1868 Pfam Chromo (CHRromatin Organisation MOdifier) domain 351 387 IPR023780 -
Aip08g00538 1868 Gene3D - 432 456 IPR038718 -
Aip08g00538 1868 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 906 1827 - -
Aip08g00538 1868 ProSiteProfiles Chromo and chromo shadow domain profile. 267 330 IPR000953 -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1401 1422 - -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1712 1726 - -
Aip08g00538 1868 Gene3D - 334 402 - -
Aip08g00538 1868 SMART PHD_3 203 248 IPR001965 -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1 22 - -
Aip08g00538 1868 ProSitePatterns Zinc finger PHD-type signature. 204 247 IPR019786 -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1666 1730 - -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1 17 - -
Aip08g00538 1868 SUPERFAMILY Chromo domain-like 364 403 IPR016197 -
Aip08g00538 1868 SUPERFAMILY FYVE/PHD zinc finger 192 251 IPR011011 -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1129 1179 - -
Aip08g00538 1868 Gene3D - 1549 1630 - -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1666 1702 - -
Aip08g00538 1868 Gene3D - 255 328 - -
Aip08g00538 1868 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 4 407 - -
Aip08g00538 1868 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 425 874 - -
Aip08g00538 1868 SMART chromo_7 266 323 IPR000953 -
Aip08g00538 1868 SMART chromo_7 330 406 IPR000953 -
Aip08g00538 1868 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 906 1827 - -
Aip08g00538 1868 Coils Coil 989 1027 - -
Aip08g00538 1868 ProSiteProfiles Chromo and chromo shadow domain profile. 338 413 IPR000953 -
Aip08g00538 1868 CDD SF2_C_SNF 537 650 - -
Aip08g00538 1868 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 407 - -
Aip08g00538 1868 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 425 874 - -
Aip08g00538 1868 Coils Coil 1549 1583 - -
Aip08g00538 1868 Gene3D - 457 691 IPR027417 -
Aip08g00538 1868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 696 IPR027417 -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1314 1335 - -
Aip08g00538 1868 ProSiteProfiles Zinc finger PHD-type profile. 201 250 IPR019787 -
Aip08g00538 1868 SUPERFAMILY Chromo domain-like 220 324 IPR016197 -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1341 1361 - -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1314 1389 - -
Aip08g00538 1868 MobiDBLite consensus disorder prediction 1363 1377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00538 Aip-Chr8 4457742 4470020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00538 204 371 Core DNA Replication Machinery Family AT4G14700 28.000 7.79e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00538 - K11642 aip:107610432 3660.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00538 08 4457742 4470020 Aip08g00538 08 4457742 4470020 ECH
Aip08g00538 08 4457742 4470020 Aip03g00328 03 3158228 3167559 PCT