Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00526 ATGTCTGAGGATGTTGGTAATAATATGAAGGACTCTTGGTTTTTCGAGAAGAATTTTAATGGCCTGTCCGACGAGGCTTTTGATGATGTCTTCAGCTTTTTAGATTTCCCGTTGGAAGATGTGGAACCGAATGTTGTTGAAGAAGACTGGGATGCTCAGTTTAAACGCATTGAGCCATGTTATGATGTTTTTTCGGTGTCATCGACTGTGCTCTGTAGTGATAAAACCCAAAATGAAAAGCCACAACTTGGGGGAAGTTTCTCTGGTTCTAGTAATGAGGTTTCTCCAATAAAACAGCTGGATGAGACTGCTGGATTGGATGTTGGAAAAACCATTCTGAACCAGAATTCATCTCTCAATGGAAAAGATTTGCATCAACTTCAAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTACTTCTTCAGCTGAGAATTCCAACTTTGATCTACCTGCCATCCCGGTAAAGCGTGCTCGAAGCAAGCGCCAGCGTGCATCGAGCTTCAGTCCTCTATTTGTGATTCCTTCTGTTCCTACTTCACCGGCTTGGCAAATTTATGAAATGAAAGTTGACCCGGAATCAAATTTAGGGACACACCATGCCGGGAAATCATTAAACAACACGAAAAAACAGAGGAAAAAGGATCTCCCTGTGCTTTCAGTTCACAATGACATGAAAAGATCTTCATCACAGGAGCCAGTTCCCACCAGAAAATGCATGCATTGCGAGGTGACAAAGACCCCACAGTGGAGAGAGGGACCGATGGGTCCAAAGACGCTGTGCAATGCCTGCGGTGTTCGATACAGGTCTGGTCGCCTCTTCCCCGAATACCGGCCAGCAGCTAGCCCCACTTTTGTACCATCAGTGCATTCAAACTGTCATAAGAAGGTCATAGAGATGAGAAGCAAAGGAATCCAGGCAAGCCTTAGGAATCCATTGTCGGCGATGTCAAACCTTCATGGAAATTCTGTAGGATAA 981 0.4444 MSEDVGNNMKDSWFFEKNFNGLSDEAFDDVFSFLDFPLEDVEPNVVEEDWDAQFKRIEPCYDVFSVSSTVLCSDKTQNEKPQLGGSFSGSSNEVSPIKQLDETAGLDVGKTILNQNSSLNGKDLHQLQTYSPVSVFESSSTSSAENSNFDLPAIPVKRARSKRQRASSFSPLFVIPSVPTSPAWQIYEMKVDPESNLGTHHAGKSLNNTKKQRKKDLPVLSVHNDMKRSSSQEPVPTRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSVHSNCHKKVIEMRSKGIQASLRNPLSAMSNLHGNSVG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00526 326 Gene3D - 231 313 IPR013088 GO:0006355|GO:0008270
Aip08g00526 326 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 27 304 - -
Aip08g00526 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 295 - -
Aip08g00526 326 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Aip08g00526 326 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Aip08g00526 326 PANTHER GATA TRANSCRIPTION FACTOR 27 304 - -
Aip08g00526 326 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Aip08g00526 326 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Aip08g00526 326 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00526 Aip-Chr8 4289645 4293785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00526 16 304 C2C2-Gata Transcription Factor Family AT1G08010 42.321 5.28e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip08g00526 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00526 - - gmx:100813303 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00526 08 4289645 4293785 Aip08g00526 08 4289645 4293785 ECH
Aip08g00526 08 4289645 4293785 Aip03g00340 03 3302654 3306275 ECH
Aip08g00526 08 4289645 4293785 Aip03g00340 03 3302654 3306275 PCT